Understanding long-range correlations in DNA sequences
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Publication:1817056
DOI10.1016/0167-2789(94)90294-1zbMATH Open0858.92025arXivchao-dyn/9403002OpenAlexW1972753913MaRDI QIDQ1817056FDOQ1817056
Authors: Wentian Li, Thomas G. Marr, Kunihiko Kaneko 
Publication date: 31 March 1997
Published in: Physica D (Search for Journal in Brave)
Abstract: In this paper, we review the literature on statistical long-range correlation in DNA sequences. We examine the current evidence for these correlations, and conclude that a mixture of many length scales (including some relatively long ones) in DNA sequences is responsible for the observed 1/f-like spectral component. We note the complexity of the correlation structure in DNA sequences. The observed complexity often makes it hard, or impossible, to decompose the sequence into a few statistically stationary regions. We suggest that, based on the complexity of DNA sequences, a fruitful approach to understand long-range correlation is to model duplication, and other rearrangement processes, in DNA sequences. One model, called ``expansion-modification system", contains only point duplication and point mutation. Though simplistic, this model is able to generate sequences with 1/f spectra. We emphasize the importance of DNA duplication in its contribution to the observed long-range correlation in DNA sequences.
Full work available at URL: https://arxiv.org/abs/chao-dyn/9403002
Recommendations
DNA sequencesmutationreview\(1/f\)-like spectral componentDNA duplicationexpansion-modification systemrearrangement processesstatistical long-range correlation
Applications of statistics to biology and medical sciences; meta analysis (62P10) Protein sequences, DNA sequences (92D20)
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Cited In (24)
- Comparative statistical analysis of bacteria genomes in ``word context
- Unbiased diffusion of Brownian particles on disordered correlated potentials
- Multiscaling in expansion-modification systems: an explanation for long range correlation in DNA
- A fractal method to distinguish coding and non-coding sequences in a complete genome based on a number sequence representation
- Multifractal characterisation of length sequences of coding and noncoding segments in a complete genome
- Entropic fluctuations in DNA sequences
- A dynamical approach to DNA sequences.
- Measuring complexity, nonextensivity and chaos in the DNA sequence of the major histocompatibility complex
- Long range clustering of oligonucleotides containing the CG signal
- Multiscaling in expansion-modification systems.
- Long-range correlations in DNA sequences using 2D DNA walk based on pairs of sequential nucleotides
- Use of Mutual Information Function and Power Spectra for Analyzing the Structure of Some Prokaryotic Genomes
- Degeneracy and long-range correlations
- A new method to study genome mutations using the information entropy
- Distance, correlation and mutual information among portraits of organisms based on complete genomes
- Multifractal analysis of DNA sequences using a novel chaos-game representation
- Long- and short-range correlations in genome organization
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- Alignment Statistics for Long-Range Correlated Genomic Sequences
- Universality of long-range correlations in expansion-randomization systems
- Wavelet-based method to disentangle transcription- and replication-associated strand asymmetries in mammalian genomes
- Symbolic strings and spatial \(1/f\) spectra
- The role played by exons in genomic DNA sequence correlations
- Lévy statistics in coding and non-coding nucleotide sequences
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