Benchmarking penalized regression methods in machine learning for single cell RNA sequencing data

DOI10.1007/978-3-031-06220-9_17MaRDI QIDQ2163973zbMATH OpenOpenAlexFDO

Authors Bhavithry Sen Puliparambil, Jabed Tomal, Yan Yan

Publication date 11 August 2022

Full work available at URL https://doi.org/10.1007/978-3-031-06220-9_17

zbMATH Keywords

feature selectionhigh dimensional dataLASSOmachine learningRsingle cell RNA sequencing

Mathematics Subject Classification ID

Applications of statistics to biology and medical sciences; meta analysis (62P10) Learning and adaptive systems in artificial intelligence (68T05) Protein sequences, DNA sequences (92D20)

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• Data denoising and post-denoising corrections in single cell RNA sequencing

Cites work

• Algorithm AS 136: A K-Means Clustering Algorithm
• scientific article; zbMATH DE number 6378127 (Why is no real title available?)
• Model Selection and Estimation in Regression with Grouped Variables
• Regression Shrinkage and Selection via The Lasso: A Retrospective
• Regularization and Variable Selection Via the Elastic Net
• Sparse group Lasso and high dimensional multinomial classification
• Sparsity and Smoothness Via the Fused Lasso
• Targeted Inference Involving High-Dimensional Data Using Nuisance Penalized Regression
• The Adaptive Lasso and Its Oracle Properties

Cited in

(5)

• Clustering methods for single-cell RNA-sequencing expression data: performance evaluation with varying sample sizes and cell compositions
• Data denoising and post-denoising corrections in single cell RNA sequencing
• A survey on normalization of single-cell RNA sequencing
• Supervised Adversarial Alignment of Single-Cell RNA-seq Data
• Clustering of single-cell transcriptome data based on evolutionary algorithm in assimilation with fuzzy C-means

Describes a project that uses

Uses Software

• R
• msgl
• seagull
• DropLasso
• HieRFIT
• AS 136
• SGL
• biglasso

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