Polymer physics of nuclear organization and function

DOI10.1101/076661MaRDI QIDQ2364240zbMATH OpenOpenAlexWikidataFDO

Authors A. Amitai, D. Holcman

Publication date 18 July 2017

Published in Physics Reports (Search for Journal in Brave)

Full work available at URL https://doi.org/10.1101/076661

zbMATH Keywords

aggregationanomalous diffusionasymptotic formulaboundary layerchromatinchromosomal capture dataclusteringcoarse-grained analysisdiffusion processesDNA repaireigenvalue expansionfirst passage timesFokker-Planck equationHi-C analysishomologous recombinationloopingmean square displacementmodelingnarrow escape theorynucleus organizationpolymer modelspotential wellssearch timesingle particle trajectoriesstochastic processesstochastic simulationsTelomeresTethering force

Mathematics Subject Classification ID

Fokker-Planck equations (35Q84) Diffusion processes (60J60) Diffusion (76R50) Statistical mechanics of polymers (82D60) Cell biology (92C37) Kinetics in biochemical problems (pharmacokinetics, enzyme kinetics, etc.) (92C45)

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Cited in

(3)

• Three-Dimensional Organization of Chromosome Territories and the Human Cell Nucleus
• Stability-complexity phase transitions induced by nonlinear spatiotemporal noise
• Analytical results for chromatin polymer models with enhancer-promoter interactions

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Uses Software

• ImageJ
• Icy

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