Polymer physics of nuclear organization and function

DOI10.1101/076661MaRDI QIDQ2364240zbMATH OpenOpenAlexWikidataFDO

Authors A. Amitai, D. Holcman

Publication date 18 July 2017

Published in Physics Reports (Search for Journal in Brave)

Full work available at URL https://doi.org/10.1101/076661

zbMATH Keywords

clusteringaggregationfirst passage timesstochastic processesFokker-Planck equationmodelingasymptotic formulaboundary layerdiffusion processesanomalous diffusionpolymer modelsmean square displacementstochastic simulationshomologous recombinationpotential wellseigenvalue expansionchromatinDNA repairsearch timeloopingnarrow escape theorychromosomal capture datacoarse-grained analysisHi-C analysisnucleus organizationsingle particle trajectoriesTelomeresTethering force

Mathematics Subject Classification ID

Diffusion processes (60J60) Fokker-Planck equations (35Q84) Diffusion (76R50) Statistical mechanics of polymers (82D60) Cell biology (92C37) Kinetics in biochemical problems (pharmacokinetics, enzyme kinetics, etc.) (92C45)

Recommendations

• The physics of polymer chain-folding
• Biopolymer dynamics
• scientific article; zbMATH DE number 1893783
• scientific article; zbMATH DE number 1893782
• scientific article; zbMATH DE number 1303218
• A study in nucleated polymerization models of protein aggregation
• scientific article; zbMATH DE number 1218935
• Polymer quantization and symmetries

Cites work

• scientific article; zbMATH DE number 3863589 (Why is no real title available?)
• scientific article; zbMATH DE number 1371341 (Why is no real title available?)
• scientific article; zbMATH DE number 3686457 (Why is no real title available?)
• scientific article; zbMATH DE number 614990 (Why is no real title available?)
• A propos de l'inverse du mouvement brownien
• Activation through a Narrow Opening
• Analysis of the mean first looping time of a rod-polymer
• Brownian dynamics at boundaries and interfaces. In physics, chemistry, and biology
• Coagulation-fragmentation for a finite number of particles and application to telomere clustering in the yeast nucleus
• Kinetics of aggregation with a finite number of particles and application to viral capsid assembly
• Kinetics of diffusing polymer encounter in confined cellular microdomains
• Optimizing the principal eigenvalue of the Laplacian in a sphere with interior traps
• Partially Reflected Diffusion
• Some kinetic problems regarding the motion of neutrons through paraffine
• Some questions related to modeling in cellular biology
• Spectra of manifolds less a small domain
• Stochastic Problems in Physics and Astronomy
• Stochastic modeling in nanoscale biophysics: subdiffusion within proteins
• Stochastic modeling of gene activation and applications to cell regulation
• The Fokker-Planck equation. Methods of solutions and applications.
• The mean first rotation time of a planar polymer
• The narrow escape problem
• The random walk's guide to anomalous diffusion: A fractional dynamics approach
• The restaurant at the end of the random walk: recent developments in the description of anomalous transport by fractional dynamics
• The search for a DNA target in the nucleus
• Time scale of diffusion in molecular and cellular biology

Describes a project that uses

Uses Software

• Icy
• ImageJ

This page was built for publication: Polymer physics of nuclear organization and function

Report a bug (only for logged in users!)Click here to report a bug for this page (MaRDI item Q2364240)