Polymer physics of nuclear organization and function

DOI10.1101/076661zbMATH Open1366.82074OpenAlexW2521872873WikidataQ58051970 ScholiaQ58051970MaRDI QIDQ2364240FDOQ2364240

Authors: A. Amitai, D. Holcman 

Publication date: 18 July 2017

Published in: Physics Reports (Search for Journal in Brave)

Full work available at URL: https://doi.org/10.1101/076661

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zbMATH Keywords

clusteringaggregationfirst passage timesstochastic processesFokker-Planck equationmodelingasymptotic formulaboundary layerdiffusion processesanomalous diffusionpolymer modelsmean square displacementstochastic simulationshomologous recombinationpotential wellseigenvalue expansionchromatinDNA repairsearch timeloopingnarrow escape theorychromosomal capture datacoarse-grained analysisHi-C analysisnucleus organizationsingle particle trajectoriesTelomeresTethering force

Mathematics Subject Classification ID

Diffusion processes (60J60) Fokker-Planck equations (35Q84) Diffusion (76R50) Statistical mechanics of polymers (82D60) Cell biology (92C37) Kinetics in biochemical problems (pharmacokinetics, enzyme kinetics, etc.) (92C45)

Cites Work

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• Analysis of the mean first looping time of a rod-polymer
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Uses Software

• ImageJ
• Icy

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