Stochastic modeling in nanoscale biophysics: subdiffusion within proteins

From MaRDI portal

Publication:2271333

Jump to:navigation, search

DOI10.1214/07-AOAS149zbMath1400.62272arXiv0807.3910OpenAlexW2002026218MaRDI QIDQ2271333

Publication date: 7 August 2009

Published in: The Annals of Applied Statistics (Search for Journal in Brave)

Full work available at URL: https://arxiv.org/abs/0807.3910

zbMATH Keywords

Fourier transform Hamiltonian fractional Brownian motion harmonic potential autocorrelation function memory kernel generalized Langevin equation

Mathematics Subject Classification ID

Applications of statistics to biology and medical sciences; meta analysis (62P10) Biochemistry, molecular biology (92C40) Diffusion processes (60J60) Stochastic analysis (60H99)

Related Items (91)

Homogenization of time-fractional diffusion equations with periodic coefficients ⋮ Testing of fractional Brownian motion in a noisy environment ⋮ A parallel-in-time two-sided preconditioning for all-at-once system from a non-local evolutionary equation with weakly singular kernel ⋮ Approximation for a generalized Langevin equation with high oscillation in time and space ⋮ Transport properties of elastically coupled fractional Brownian motors ⋮ Generalized Langevin equation with tempered memory kernel ⋮ Polymer physics of nuclear organization and function ⋮ Rate of convergence of Euler approximation of time-dependent mixed SDEs driven by Brownian motions and fractional Brownian motions ⋮ The small-mass limit and white-noise limit of an infinite dimensional generalized Langevin equation ⋮ A novel discrete fractional Grönwall-type inequality and its application in pointwise-in-time error estimates ⋮ Approximation of stationary solutions to SDEs driven by multiplicative fractional noise ⋮ The generalized Langevin equation in harmonic potentials: anomalous diffusion and equipartition of energy ⋮ Stochastic resonance in a harmonic oscillator with fractional-order external and intrinsic dampings ⋮ Time Discretization of a Tempered Fractional Feynman--Kac Equation with Measure Data ⋮ Numerical stability of Grünwald-Letnikov method for time fractional delay differential equations ⋮ A Generalized Definition of Caputo Derivatives and Its Application to Fractional ODEs ⋮ Measurement error correction in particle tracking microrheology ⋮ A novel alternating-direction implicit spectral Galerkin method for a multi-term time-space fractional diffusion equation in three dimensions ⋮ Fokker-Planck type equations associated with subordinated processes controlled by tempered \(\alpha \)-stable processes ⋮ Asymptotic behaviour of time averages for non-ergodic Gaussian processes ⋮ Reconstructing Complex Fluid Properties from the Behavior of Fluctuating Immersed Particles ⋮ On the Hölder regularity of a linear stochastic partial-integro-differential equation with memory ⋮ Stochastic resonance system with linear random frequency fluctuation for aperiodic LFM signal ⋮ The Asymptotic Distribution of The Pathwise Mean Squared Displacement in Single Particle Tracking Experiments ⋮ Fractional stochastic differential equations satisfying fluctuation-dissipation theorem ⋮ Fluid-particle dynamics for passive tracers advected by a thermally fluctuating viscoelastic medium ⋮ REGULARIZATION OF CAUCHY PROBLEM FOR 2D TIME-FRACTIONAL DIFFUSION EVOLUTION EQUATIONS ⋮ Strong error analysis of Euler methods for overdamped generalized Langevin equations with fractional noise: Nonlinear case ⋮ Boundary controllability of Riemann-Liouville fractional semilinear evolution systems ⋮ Well-posedness results for nonlinear fractional diffusion equation with memory quantity ⋮ The overdamped generalized Langevin equation with Hermite noise ⋮ Scaling limits of spatial compartment models for chemical reaction networks ⋮ Homogenization for generalized Langevin equations with applications to anomalous diffusion ⋮ A linear Galerkin numerical method for a quasilinear subdiffusion equation ⋮ A linearized L1-Galerkin FEM for non-smooth solutions of Kirchhoff type quasilinear time-fractional integro-differential equation ⋮ Numerical recovery of a time-dependent potential in subdiffusion ^* ⋮ Inverse Problems for Subdiffusion from Observation at an Unknown Terminal Time ⋮ Numerical Analysis of Nonlinear Subdiffusion Equations ⋮ A Milstein-type scheme without Lévy area terms for SDEs driven by fractional Brownian motion ⋮ Collectivity in diffusion of colloidal particles: from effective interactions to spatially correlated noise ⋮ Asymptotic Analysis of the Mean Squared Displacement under Fractional Memory Kernels ⋮ Numerical schemes for rough parabolic equations ⋮ Stochastic resonance in a linear fractional Langevin equation ⋮ On \(1/f\) noise ⋮ Unnamed Item ⋮ Unique determination of fractional order and source term in a fractional diffusion equation from sparse boundary data ⋮ Statistical methodology in single-molecule experiments ⋮ High-order Time Stepping Schemes for Semilinear Subdiffusion Equations ⋮ Stochastic partial differential equations driven by space-time fractional noises ⋮ A least square-type procedure for parameter estimation in stochastic differential equations with additive fractional noise ⋮ Iterative methods for mesh approximations of optimal control problems controlled by linear equations with fractional derivatives ⋮ Homogenization for a class of generalized Langevin equations with an application to thermophoresis ⋮ Rate of convergence to equilibrium of fractional driven stochastic differential equations with rough multiplicative noise ⋮ Fractional Fokker-Planck equation and Black-Scholes formula in composite-diffusive regime ⋮ Multilevel Monte Carlo for stochastic differential equations with additive fractional noise ⋮ Rotational invariance of stochastic processes with application to fractional dynamics ⋮ Resonant behavior of a harmonic oscillator with fluctuating mass driven by a Mittag-Leffler noise ⋮ Statistical challenges in microrheology ⋮ Generalized stochastic resonance for a fractional noisy oscillator with random mass and random damping ⋮ The stochastic resonance behaviors of a generalized harmonic oscillator subject to multiplicative and periodically modulated noises ⋮ Numerical methods for time-fractional evolution equations with nonsmooth data: a concise overview ⋮ Unnamed Item ⋮ Nonparametric inference of doubly stochastic Poisson process data via the kernel method ⋮ Calibration of the subdiffusive arithmetic Brownian motion with tempered stable waiting-times ⋮ Rough Volterra equations. II: Convolutional generalized integrals ⋮ Small mass limit and diffusion approximation for a generalized Langevin equation with infinite number degrees of freedom ⋮ Correlation analysis of enzymatic reaction of a single protein molecule ⋮ Ergodic properties of anomalous diffusion processes ⋮ Fokker-Planck type equations associated with fractional Brownian motion controlled by infinitely divisible processes ⋮ Anomalous Diffusion and the Generalized Langevin Equation ⋮ Equivalence of subordinated processes with tempered \(\alpha\)-stable waiting times and fractional Fokker-Planck equations in space and time dependent fields ⋮ Diffusion and Fokker-Planck-Smoluchowski equations with generalized memory kernel ⋮ Brownian motion under dynamic disorder: effects of memory on the decay of the non-Gaussianity parameter ⋮ Stochastic partial differential equations with gradient driven by space-time fractional noises ⋮ On fractional Lévy processes: tempering, sample path properties and stochastic integration ⋮ On the wavelet-based simulation of anomalous diffusion ⋮ Regional boundary controllability of semilinear subdiffusion Caputo fractional systems ⋮ Two-step wavelet-based estimation for Gaussian mixed fractional processes ⋮ A Discretization of Caputo Derivatives with Application to Time Fractional SDEs and Gradient Flows ⋮ Galerkin finite element schemes with fractional Crank-Nicolson method for the coupled time-fractional nonlinear diffusion system ⋮ Rate of convergence to equilibrium for discrete-time stochastic dynamics with memory ⋮ A selective view of stochastic inference and modeling problems in nanoscale biophysics ⋮ On existence and regularity of a terminal value problem for the time fractional diffusion equation ⋮ Fluid heterogeneity detection based on the asymptotic distribution of the time-averaged mean squared displacement in single particle tracking experiments ⋮ Minimum contrast estimation in fractional Ornstein-Uhlenbeck process: Continuous and discrete sampling ⋮ Numerical Estimation of a Diffusion Coefficient in Subdiffusion ⋮ Error of the Galerkin scheme for a semilinear subdiffusion equation with time-dependent coefficients and nonsmooth data ⋮ The generalized Langevin equation with power-law memory in a nonlinear potential well ⋮ Partially explicit time discretization for time fractional diffusion equation ⋮ Brownian motion of a Rayleigh particle confined in a channel: a generalized Langevin equation approach ⋮ Fractional Brownian motion in superharmonic potentials and non-Boltzmann stationary distributions

Cites Work

This page was built for publication: Stochastic modeling in nanoscale biophysics: subdiffusion within proteins

Retrieved from "https://portal.mardi4nfdi.de/w/index.php?title=Publication:2271333&oldid=14829067"