Logic based methods for SNPs tagging and reconstruction

DOI10.1016/J.COR.2009.10.008zbMATH Open1183.90454OpenAlexW2055351500MaRDI QIDQ2379650FDOQ2379650

Authors: P. Bertolazzi, Giovanni Felici, Paola Festa 

Publication date: 19 March 2010

Published in: Computers \& Operations Research (Search for Journal in Brave)

Full work available at URL: https://doi.org/10.1016/j.cor.2009.10.008

Recommendations

• An integer programming approach for the selection of tag SNPs using multi-allelic LD
• Tag SNP selection based on clustering according to dominant sets found using replicator dynamics
• CLUSTAG & WCLUSTAG: Hierarchical Clustering Algorithms for Efficient Tag-SNP Selection
• Testing SNPs and sets of SNPs for importance in association studies
• Selection of minimum subsets of single nucleotide polymorphisms to capture haplotype block diversity

zbMATH Keywords

feature selectionlogic programmingset covering heuristicstag SNPs selection

Mathematics Subject Classification ID

Approximation methods and heuristics in mathematical programming (90C59) Boolean programming (90C09)

Cites Work

• Design of Logic‐based Intelligent Systems
• A Mathematical Theory of Communication
• Title not available (Why is that?)
• GRASP: An annoted bibliography
• Title not available (Why is that?)
• A probabilistic heuristic for a computationally difficult set covering problem
• Greedy randomized adaptive search procedures
• Logical analysis of binary data with missing bits
• Logic classification and feature selection for biomedical data

Cited In (7)

• An integer programming approach for the selection of tag SNPs using multi-allelic LD
• Increasing the power of association studies by imputation-based sparse tag SNP selection
• Testing SNPs and sets of SNPs for importance in association studies
• Logical analysis of data as a tool for the analysis of probabilistic discrete choice behavior
• Features selection using parametric and non-parametric methods: tag SNPs selection using GA-SVM and GA-KNN
• Tag SNP selection based on clustering according to dominant sets found using replicator dynamics
• CLUSTAG & WCLUSTAG: Hierarchical Clustering Algorithms for Efficient Tag-SNP Selection

Uses Software

• GRASP
• HapBlock

This page was built for publication: Logic based methods for SNPs tagging and reconstruction

Report a bug (only for logged in users!)Click here to report a bug for this page (MaRDI item Q2379650)