Tag SNP selection based on clustering according to dominant sets found using replicator dynamics

DOI10.1007/S11634-010-0059-2MaRDI QIDQ481938zbMATH OpenOpenAlexFDO

Authors Florian Frommlet

Publication date 18 December 2014

Published in Advances in Data Analysis and Classification. ADAC (Search for Journal in Brave)

Full work available at URL https://doi.org/10.1007/s11634-010-0059-2

zbMATH Keywords

clusteringdominant setreplicator dynamicstag SNP selection

Mathematics Subject Classification ID

Classification and discrimination; cluster analysis (statistical aspects) (62H30) Applications of statistics to biology and medical sciences; meta analysis (62P10) Quadratic programming (90C20) Dynamic programming (90C39) Protein sequences, DNA sequences (92D20)

Recommendations

• CLUSTAG & WCLUSTAG: Hierarchical Clustering Algorithms for Efficient Tag-SNP Selection
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• SHARE: an adaptive algorithm to select the most informative set of SNPs for candidate genetic association
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Cites work

• A dynamic programming algorithm for haplotype block partitioning
• Evolution towards the maximum clique
• Extending the Modified Bayesian Information Criterion (mBIC) to Dense Markers and Multiple Interval Mapping
• scientific article; zbMATH DE number 5008179 (Why is no real title available?)
• Image Segmentation by Dominant Sets
• Maxima for Graphs and a New Proof of a Theorem of Turán
• Payoff-Monotonic Game Dynamics and the Maximum Clique Problem
• Public and private communication are different: Results on relative expressivity

Cited in

(6)

• Dominant-set clustering: a review
• Logic based methods for SNPs tagging and reconstruction
• CLUSTAG & WCLUSTAG: Hierarchical Clustering Algorithms for Efficient Tag-SNP Selection
• Features selection using parametric and non-parametric methods: tag SNPs selection using GA-SVM and GA-KNN
• An integer programming approach for the selection of tag SNPs using multi-allelic LD
• Increasing the power of association studies by imputation-based sparse tag SNP selection

Describes a project that uses

Uses Software

• TAGster
• Haploview

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