An integer programming approach for the selection of tag SNPs using multi-allelic LD

DOI10.4310/CIS.2009.V9.N3.A3MaRDI QIDQ964232zbMATHOpenAlexFDO

Authors Yang-Ho Chen, Ting Chen

Publication date 15 April 2010

Published in Communications in Information and Systems (Search for Journal in Brave)

Full work available at URL https://projecteuclid.org/euclid.cis/1264171156

zbMATH Keywords

integer programmingpower analysismulti-markertag SNP

Mathematics Subject Classification ID

Biochemistry, molecular biology (92C40) Integer programming (90C10)

Recommendations

• CLUSTAG & WCLUSTAG: Hierarchical Clustering Algorithms for Efficient Tag-SNP Selection
• Logic based methods for SNPs tagging and reconstruction
• Tag SNP selection based on clustering according to dominant sets found using replicator dynamics
• Selection of minimum subsets of single nucleotide polymorphisms to capture haplotype block diversity
• Increasing the power of association studies by imputation-based sparse tag SNP selection

Cited in

(8)

• Generating SNP barcode to evaluate SNP-SNP interaction of disease by particle swarm opti\-mi\-zation
• SHARE: an adaptive algorithm to select the most informative set of SNPs for candidate genetic association
• Logic based methods for SNPs tagging and reconstruction
• CLUSTAG & WCLUSTAG: Hierarchical Clustering Algorithms for Efficient Tag-SNP Selection
• Features selection using parametric and non-parametric methods: tag SNPs selection using GA-SVM and GA-KNN
• Tag SNP selection based on clustering according to dominant sets found using replicator dynamics
• Selection of representative SNP sets for genome-wide association studies: a metaheuristic approach
• Increasing the power of association studies by imputation-based sparse tag SNP selection

This page was built for publication: An integer programming approach for the selection of tag SNPs using multi-allelic LD

Report a bug (only for logged in users!)Click here to report a bug for this page (MaRDI item Q964232)