On permuted super-secondary structures of transmembrane -barrel proteins

DOI10.1016/J.TCS.2013.10.001;zbMATH Open1422.92108MaRDI QIDQ2453172FDOQ2453172

Authors: Van Du T. Tran, Philippe Chassignet, Jean-Marc Steyaert 

Publication date: 6 June 2014

Published in: Theoretical Computer Science (Search for Journal in Brave)

Full work available at URL: https://www.sciencedirect.com/science/article/pii/S0304397513007391/pdfft?isDTMRedir=true&download=true

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zbMATH Keywords

tree decomposition\textit{ab initio} modelingGreek keypermuted structuresuper-secondary structure predictiontransmembrane \(\beta\)-barrel protein

Mathematics Subject Classification ID

Protein sequences, DNA sequences (92D20)

Cites Work

• Introduction to algorithms.
• Complexity of Finding Embeddings in a k-Tree
• Efficient algorithms for combinatorial problems on graphs with bounded decomposability - a survey
• Title not available (Why is that?)

Cited In (3)

• Residue centrality in alpha helical polytopic transmembrane protein structures
• \(\beta\)-barrel transmembrane proteins: geometric modelling, detection of transmembrane region, and structural properties
• A deterministic algorithm for constrained enumeration of transmembrane protein folds

Uses Software

• PRED-TMBB
• TMBETA-NET
• PSIPRED
• TMBpro

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