On permuted super-secondary structures of transmembrane -barrel proteins

DOI10.1016/J.TCS.2013.10.001;MaRDI QIDQ2453172zbMATH OpenFDO

Authors Van Du T. Tran, Philippe Chassignet, Jean-Marc Steyaert

Publication date 6 June 2014

Published in Theoretical Computer Science (Search for Journal in Brave)

Full work available at URL https://www.sciencedirect.com/science/article/pii/S0304397513007391/pdfft?isDTMRedir=true&download=true

zbMATH Keywords

tree decomposition\textit{ab initio} modelingGreek keypermuted structuresuper-secondary structure predictiontransmembrane \(\beta\)-barrel protein

Mathematics Subject Classification ID

Protein sequences, DNA sequences (92D20)

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• scientific article; zbMATH DE number 1222695

Cites work

• scientific article; zbMATH DE number 4060712 (Why is no real title available?)
• Complexity of Finding Embeddings in a k-Tree
• Efficient algorithms for combinatorial problems on graphs with bounded decomposability - a survey
• Introduction to algorithms.

Cited in

(3)

• Residue centrality in alpha helical polytopic transmembrane protein structures
• \(\beta\)-barrel transmembrane proteins: geometric modelling, detection of transmembrane region, and structural properties
• A deterministic algorithm for constrained enumeration of transmembrane protein folds

Describes a project that uses

Uses Software

• TMBpro
• PSIPRED
• TMBETA-NET
• PRED-TMBB

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