Synchronized dynamics and non-equilibrium steady states in a stochastic yeast cell-cycle net\-work
From MaRDI portal
Publication:2476839
Boltzmann machinecirculation theoryhopfield networknon-equilibrium steady statesynchronizationyeast cell cycle
Applications of graph theory (05C90) Applications of Markov chains and discrete-time Markov processes on general state spaces (social mobility, learning theory, industrial processes, etc.) (60J20) Applications of statistical mechanics to specific types of physical systems (82D99) Cell biology (92C37) Biochemistry, molecular biology (92C40)
Abstract: Applying the mathematical circulation theory of Markov chains, we investigate the synchronized stochastic dynamics of a discrete network model of yeast cell-cycle regulation where stochasticity has been kept rather than being averaged out. By comparing the network dynamics of the stochastic model with its corresponding deterministic network counterpart, we show that the synchronized dynamics can be soundly characterized by a dominant circulation in the stochastic model, which is the natural generalization of the deterministic limit cycle in the deterministic system. Moreover, the period of the main peak in the power spectrum, which is in common use to characterize the synchronized dynamics, perfectly corresponds to the number of states in the main cycle with dominant circulation. Such a large separation in the magnitude of the circulations, between a dominant, main cycle and the rest, gives rise to the stochastic synchronization phenomenon.
Recommendations
Cites work
- A mechanism of synchronization in interacting multi-cell genetic systems
- Circulation for recurrent markov chains
- Computational cell biology
- Concentration fluctuations in a mesoscopic oscillating chemical reaction system
- Fundamental facts concerning reversible master equations
- scientific article; zbMATH DE number 3864241 (Why is no real title available?)
- scientific article; zbMATH DE number 3566657 (Why is no real title available?)
- scientific article; zbMATH DE number 1796817 (Why is no real title available?)
- scientific article; zbMATH DE number 3806623 (Why is no real title available?)
- scientific article; zbMATH DE number 750174 (Why is no real title available?)
- scientific article; zbMATH DE number 819507 (Why is no real title available?)
- scientific article; zbMATH DE number 912624 (Why is no real title available?)
- Mathematical biology. Vol. 1: An introduction.
- Mathematical theory of nonequilibrium steady states. On the frontier of probability and dynamical systems.
- Modeling Brain Function
- Neural networks and physical systems with emergent collective computational abilities
- Neurons with graded response have collective computational properties like those of two-state neurons
- Stochastic approach to chemical kinetics
- Stochastic model of yeast cell-cycle network
- Stochastic modelling for systems biology.
- The Green–Kubo formula and power spectrum of reversible Markov processes
- Variational approach in studies with Fokker-Planck equations.
Cited in
(5)- Derivation and experimental comparison of cell-division probability densities
- Stochastic model of yeast cell-cycle network
- On the Poincaré-Hill cycle map of rotational random walk: locating the stochastic limit cycle in a reversible Schnakenberg model
- Landscape, kinetics, paths and statistics of curl flux, coherence, entanglement and energy transfer in non-equilibrium quantum systems
- Synchronization in Discrete-Time, Discrete-State Random Dynamical Systems
This page was built for publication: Synchronized dynamics and non-equilibrium steady states in a stochastic yeast cell-cycle net\-work
Report a bug (only for logged in users!)Click here to report a bug for this page (MaRDI item Q2476839)
