| Publication | Date of Publication | Type |
|---|
Thermodynamics of Markov Processes with Non-extensive Entropy and Free Energy
(available as arXiv preprint) | N/A | Paper |
Mesoscopic and macroscopic entropy balance equations in a stochastic dynamics and its deterministic limit
Journal of Statistical Physics | 2025-08-19 | Paper |
A model for the spread of infectious diseases compatible with case data
Proceedings of the Royal Society of London. A. Mathematical, Physical and Engineering Sciences | 2025-05-13 | Paper |
Statistical uncertainty principle in Markov kinetics
Annals of Physics | 2024-09-10 | Paper |
Exact power spectrum in a minimal hybrid model of stochastic gene expression oscillations
SIAM Journal on Applied Mathematics | 2024-06-12 | Paper |
Estimate exponential memory decay in hidden Markov model and its applications to inference
Physica D | 2024-05-03 | Paper |
| On Thermodynamic Information | 2023-12-06 | Paper |
The statistical foundation of entropy in extended irreversible thermodynamics
Journal of Physics A: Mathematical and Theoretical | 2023-01-24 | Paper |
| Internal Energy, Fundamental Thermodynamic Relation, and Gibbs' Ensemble Theory as Laws of Statistical Counting | 2022-09-26 | Paper |
Stochastic dynamics: models for intrinsic and extrinsic noises and their applications
SCIENTIA SINICA Mathematica | 2022-03-21 | Paper |
| On the Posterior Distribution of a Random Process Conditioned on Empirical Frequencies of a Finite Path: the i.i.d and finite Markov chain case | 2022-02-23 | Paper |
Stochastic chemical reaction systems in biology
Lecture Notes on Mathematical Modelling in the Life Sciences | 2021-10-26 | Paper |
Machine learning steered symbolic execution framework for complex software code
Formal Aspects of Computing | 2021-08-30 | Paper |
| Nonequilibrium Stationary Process and Fluctuation-Dissipation Relations | 2021-06-24 | Paper |
Intermittent synchronization in finite-state random networks under Markov perturbations
Communications in Mathematical Physics | 2021-06-08 | Paper |
Asymptotic behavior of a sequence of conditional probability distributions and the canonical ensemble
Annales Henri Poincaré | 2021-05-14 | Paper |
Bivectorial nonequilibrium thermodynamics: cycle affinity, vorticity potential, and Onsager's principle
Journal of Statistical Physics | 2021-03-12 | Paper |
Stochastic limit-cycle oscillations of a nonlinear system under random perturbations
Journal of Statistical Physics | 2021-03-12 | Paper |
Universal ideal behavior and macroscopic work relation of linear irreversible stochastic thermodynamics
New Journal of Physics | 2021-01-13 | Paper |
Time-dependent saddle-node bifurcation: breaking time and the point of no return in a non-autonomous model of critical transitions
Physica D | 2021-01-12 | Paper |
Time-dependent saddle-node bifurcation: breaking time and the point of no return in a non-autonomous model of critical transitions
Physica D | 2021-01-12 | Paper |
The research of superheated steam temperature control based on generalized predictive control algorithm and adaptive forgetting factor
International Journal of Adaptive Control and Signal Processing | 2020-10-26 | Paper |
| Emergence and Breaking of Duality Symmetry in Generalized Fundamental Thermodynamic Relations | 2020-09-26 | Paper |
Thermodynamic constraints for biochemical networks
Journal of Theoretical Biology | 2020-06-03 | Paper |
Mathematical representation of Clausius' and Kelvin's statements of the second law and irreversibility
Journal of Statistical Physics | 2020-05-26 | Paper |
| Stochastic population kinetics and its underlying mathematicothermodynamics | 2020-05-19 | Paper |
Representations and divergences in the space of probability measures and stochastic thermodynamics
Journal of Computational and Applied Mathematics | 2020-04-15 | Paper |
Synchronization in Discrete-Time, Discrete-State Random Dynamical Systems
SIAM Journal on Applied Dynamical Systems | 2020-02-27 | Paper |
| Stochastic Dynamics, Large Deviations Principle, and Non-equilibrium Thermodynamics | 2020-02-26 | Paper |
The Statistical Foundation of Entropy in Extended Irreversible Thermodynamics
(available as arXiv preprint) | 2020-02-26 | Paper |
A new rule to combine dependent bodies of evidence
Soft Computing | 2020-02-20 | Paper |
Entropy productions in dissipative systems
Proceedings of the American Mathematical Society | 2019-10-28 | Paper |
Stochastic dynamics. II: Finite random dynamical systems, linear representation, and entropy production
Discrete and Continuous Dynamical Systems. Series B | 2019-08-28 | Paper |
Research on pressurizer pressure control based on adaptive prediction algorithm
Complexity | 2019-06-25 | Paper |
| Unified formalism for entropy productions and fluctuation relations | 2019-04-01 | Paper |
| Ternary Representation of Stochastic Change and the Origin of Entropy and Its Fluctuations | 2019-02-25 | Paper |
| Generalized Boltzmann distributions for systems strongly coupled to large finite bath -- a microcanonical approach | 2018-11-27 | Paper |
Dynamic looping of a free-draining polymer
SIAM Journal on Applied Mathematics | 2018-01-22 | Paper |
A thermodynamic theory of ecology: Helmholtz theorem for Lotka-Volterra equation, extended conservation law, and stochastic predator-prey dynamics
Proceedings of the Royal Society A: Mathematical, Physical and Engineering Sciences | 2017-09-29 | Paper |
Irreversible stochastic processes, coupled diffusions and systems biochemistry
Frontiers in Computational and Systems Biology | 2017-09-21 | Paper |
Mathematical formalism of nonequilibrium thermodynamics for nonlinear chemical reaction systems with general rate law
Journal of Statistical Physics | 2017-06-08 | Paper |
| Kinematic Basis of Emergent Energetics of Complex Dynamics | 2017-03-22 | Paper |
A discrete stochastic formulation for reversible bimolecular reactions via diffusion encounter
Communications in Mathematical Sciences | 2016-11-22 | Paper |
Stochastic dynamics: Markov chains and random transformations
Discrete and Continuous Dynamical Systems. Series B | 2016-09-30 | Paper |
Book review of: P. Érdi and G. Lente, Stochastic chemical kinetics. Theory and (mostly) systems biological applications
SIAM Review | 2016-05-20 | Paper |
A stochastic model of oscillatory blood testosterone levels
Bulletin of Mathematical Biology | 2016-04-05 | Paper |
Landscapes of non-gradient dynamics without detailed balance: Stable limit cycles and multiple attractors
Chaos | 2016-03-04 | Paper |
The zeroth law of thermodynamics and volume-preserving conservative system in equilibrium with stochastic damping
Physics Letters. A | 2016-02-29 | Paper |
Book review of: J. R. Dorfman, An introduction to chaos in nonequilibrium statistical mechanics
Bulletin of Mathematical Biology | 2015-10-27 | Paper |
Ultrasensitive dual phosphorylation dephosphorylation cycle kinetics exhibits canonical competition behavior
Chaos: An Interdisciplinary Journal of Nonlinear Science | 2015-07-27 | Paper |
Circular stochastic fluctuations in SIS epidemics with heterogeneous contacts among sub-populations
Theoretical Population Biology | 2015-03-13 | Paper |
| Thermodynamics of the General Diffusion Process: Equilibrium Supercurrent and Nonequilibrium Driven Circulation with Dissipation | 2014-12-18 | Paper |
A decomposition of irreversible diffusion processes without detailed balance
Journal of Mathematical Physics | 2014-03-06 | Paper |
Analytical mechanics in stochastic dynamics: most probable path, large-deviation rate function and Hamilton-Jacobi equation
International Journal of Modern Physics B | 2013-11-12 | Paper |
Book review of: M. I. Freidlin and A. D. Wentzell, Random perturbations of dynamical systems. 3rd ed.
SIAM Review | 2013-09-26 | Paper |
One-dimensional birth-death process and Delbrück-Gillespie theory of mesoscopic nonlinear chemical reactions
Studies in Applied Mathematics | 2013-02-21 | Paper |
| A Hamiltonian-Entropy Production Connection in the Skew-symmetric Part of a Stochastic Dynamics | 2012-05-30 | Paper |
| Stochastic Free Energies, Conditional Probability and Legendre Transform for Ensemble Change | 2011-12-13 | Paper |
| Thermodynamics and Geometry of Reversible and Irreversible Markov Processes | 2011-08-19 | Paper |
Nonlinear stochastic dynamics of mesoscopic homogeneous biochemical reaction systems - an analytical theory
Nonlinearity | 2011-06-30 | Paper |
The dynamics of zeroth-order ultrasensitivity: a critical phenomenon in cell biology
Discrete and Continuous Dynamical Systems. Series S | 2011-06-10 | Paper |
| Stochastic Thermodynamics Across Scales: Emergent Inter-attractoral Discrete Markov Jump Process and Its Underlying Continuous Diffusion | 2011-03-16 | Paper |
Cellular biology in terms of stochastic nonlinear biochemical dynamics: Emergent properties, isogenetic variations and chemical system inheritability
Journal of Statistical Physics | 2011-01-07 | Paper |
Nonlinear oscillations and multiscale dynamics in a closed chemical reaction system
Journal of Dynamics and Differential Equations | 2010-11-22 | Paper |
On the Poincaré-Hill cycle map of rotational random walk: locating the stochastic limit cycle in a reversible Schnakenberg model
Proceedings of the Royal Society A: Mathematical, Physical and Engineering Sciences | 2010-10-02 | Paper |
| Irreversible Thermodynamics in Multiscale Stochastic Dynamical Systems | 2010-03-18 | Paper |
| Chemical biophysics. Quantitative analysis of cellular systems. | 2009-12-03 | Paper |
| The semantic model and query mechanism for grid workflow | 2009-03-06 | Paper |
A quasistationary analysis of a stochastic chemical reaction: Keizer's paradox
Bulletin of Mathematical Biology | 2008-04-22 | Paper |
Synchronized dynamics and non-equilibrium steady states in a stochastic yeast cell-cycle net\-work
Mathematical Biosciences | 2008-03-12 | Paper |
On detailed balance and reversibility of semi-Markov processes and single-molecule enzyme kinetics
Journal of Mathematical Physics | 2007-05-16 | Paper |
Concentration fluctuations in a mesoscopic oscillating chemical reaction system
Proceedings of the National Academy of Sciences | 2002-09-11 | Paper |
Thermodynamics of the general diffusion process: time-reversibility and entropy production
Journal of Statistical Physics | 2002-08-15 | Paper |
Mathematical formalism for isothermal linear irreversibility
Proceedings of the Royal Society of London. Series A: Mathematical and Physical Sciences | 2002-06-13 | Paper |
A mathematical analysis for the Brownian dynamics of a DNA tether
Journal of Mathematical Biology | 2001-09-18 | Paper |
A simple method of parameter space determination for diffusion-driven instability with three species
Applied Mathematics Letters | 2001-08-07 | Paper |
The mathematical theory of molecular motor movement and chemomechanical energy transduction
Journal of Mathematical Chemistry | 2001-06-19 | Paper |
| Relative Entropy: Free Energy Associated with Equilibrium Fluctuations and Nonequilibrium Deviations | 2000-07-08 | Paper |
On two-dimensional fractional Brownian motion and fractional Brownian random field
Journal of Physics A: Mathematical and General | 1999-12-06 | Paper |
| scientific article; zbMATH DE number 596332 (Why is no real title available?) | 1994-06-27 | Paper |
