Maximum likelihood estimation of a migration matrix and effective population sizes in n subpopulations by using a coalescent approach

DOI10.1073/pnas.081068098zbMath0993.62096OpenAlexW2146442942WikidataQ29616117 ScholiaQ29616117MaRDI QIDQ2710165

Joseph Felsenstein, Peter Beerli

Publication date: 18 April 2001

Published in: Proceedings of the National Academy of Sciences (Search for Journal in Brave)

Full work available at URL: https://doi.org/10.1073/pnas.081068098

zbMATH Keywords

population geneticsMetropolis-Hastings algorithmcoalescence theory

Mathematics Subject Classification ID

Applications of statistics to biology and medical sciences; meta analysis (62P10) Problems related to evolution (92D15) Numerical analysis or methods applied to Markov chains (65C40) Genetics and epigenetics (92D10)

Related Items (12)

Demographic inference under the coalescent in a spatial continuum ⋮ Evolution in heterogeneous populations: from migration models to fixation probabilities ⋮ Genetic diversity of microsatellite loci in hierarchically structured populations ⋮ Stability of financial market driven by information delay and liquidity in delay agent-based model ⋮ Brownian models and coalescent structures ⋮ Dynamic forecasting performance and liquidity evaluation of financial market by econophysics and Bayesian methods ⋮ Corridors for migration between large subdivided populations, and the structured coalescent ⋮ Exact limits of inference in coalescent models ⋮ The combinatorics of discrete time-trees: theory and open problems ⋮ Inference in two dimensions: allele frequencies versus lengths of shared sequence blocks ⋮ Structured coalescent with nonconservative migration ⋮ Stepwise mutation likelihood computation by sequential importance sampling in subdivided population models

Uses Software

• Genetree

Cites Work

• The coalescent
• Properties of a neutral allele model with intragenic recombination
• Minimal Mutation Trees of Sequences
• Risk models in genetic epidemiology
• Inference from gene trees in a subdivided population

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