Stochastic simulation of the kinetics of multiple interacting nucleic acid strands
DOI10.1007/978-3-319-21999-8_13zbMATH Open1403.92222OpenAlexW1899647483MaRDI QIDQ2948418FDOQ2948418
Authors: J. Schäeffer, Chris Thachuk, Erik Winfree 
Publication date: 30 September 2015
Published in: Lecture Notes in Computer Science (Search for Journal in Brave)
Full work available at URL: https://thesis.library.caltech.edu/7460/1/JosephSchaeffer_PhD_Thesis_Complete.pdf
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Cites Work
Cited In (9)
- A Framework for Modeling DNA Based Molecular Systems
- The importance of thermodynamics for molecular systems, and the importance of molecular systems for thermodynamics
- Verifying chemical reaction network implementations: a pathway decomposition approach
- Abstract modelling of tethered DNA circuits
- Thermodynamic Analysis of Interacting Nucleic Acid Strands
- Pseudo-Marginal Inference for CTMCs on Infinite Spaces via Monotonic Likelihood Approximations
- Inferring parameters for an elementary step model of DNA structure kinetics with locally context-dependent Arrhenius rates
- Numerical simulation of biological base pairs considering geometric and energetic criteria
- Design of nucleic acid strands with long low-barrier folding pathways
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