DNA Torsional Solitons in the Presence of Localized Inhomogeneities

DOI10.1238/PHYSICA.REGULAR.066A00385zbMATH Open1124.92301arXivnlin/0112040OpenAlexW4230316675MaRDI QIDQ4656284FDOQ4656284

Owen Pavel Fernandez, L. Morales Molina

Publication date: 11 March 2005

Published in: Physica Scripta (Search for Journal in Brave)

Abstract: In the present paper we investigate the influence of inhomogeneities in the dynamics and stability of DNA open states, modeled as propagating solitons in the spirit of a Generalized Yakushevish Model. It is a direct consecuence of our model that there exists a critical distance between the soliton's center of mass and the inhomogeneity at which the interaction between them can change the stability of the open state.Furtherly from this results was derived a renormalized potential funtion.

Full work available at URL: https://arxiv.org/abs/nlin/0112040

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Mathematics Subject Classification ID

Protein sequences, DNA sequences (92D20)

Cited In (3)

• Propagation of Twist Solitons in Fully Inhomogeneous DNA Chains
• Perturbed soliton excitations in the DNA double helix
• Solitons in a double pendulums chain model, and DNA roto-torsional dynamics

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