Perturbed soliton excitations in the DNA double helix
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Publication:997361
DOI10.1016/J.PHYSD.2007.04.005zbMATH Open1117.35325arXivnlin/0602037OpenAlexW2110310221MaRDI QIDQ997361FDOQ997361
Authors: J. Martínez 
Publication date: 23 July 2007
Published in: Physica D (Search for Journal in Brave)
Abstract: We study nonlinear dynamics of a periodic inhomogeneous DNA double helical chain under dynamic plane-base rotator model by considering angular rotation of bases in a plane normal to the helical axis. The dynamics is governed by a perturbed sine-Gordon equation. The perturbed soliton solution is obtained using a multiple scale soliton perturbation theory. The perturbed kink-antikink solitons represent formation of open state configuration with fluctuation in DNA.
Full work available at URL: https://arxiv.org/abs/nlin/0602037
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Genetics and epigenetics (92D10) KdV equations (Korteweg-de Vries equations) (35Q53) Perturbations, KAM theory for infinite-dimensional Hamiltonian and Lagrangian systems (37K55)
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Cited In (27)
- DNA Torsional Solitons in the Presence of Localized Inhomogeneities
- Perturbed soliton-like molecular excitations in a deformed DNA chain
- Propagation of twist solitons in fully inhomogeneous DNA chains
- Soliton propagation in homogeneous and inhomogeneous models for DNA torsion dynamics
- Nonlinear dynamics of DNA systems with inhomogeneity effects
- Mode conversions and molecular forms of breathers under parameter control
- On terahertz solitons in DNA
- Soliton-based logic gates using spin ladder
- Nonlinear dynamics of DNA -- Riccati generalized solitary wave solutions
- Exact solutions for a nonlinear model
- Coupled sine-Gordon systems in DNA dynamics
- Compacton anti-compacton pair for hydrogen bonds and rotational waves in DNA dynamics
- Dynamics of DNA breathing in the Peyrard-Bishop model with damping and external force
- Perturbed soliton solutions for an integral modified KdV equation
- DNA-RNA transcription as an impact of viscosity
- Solitons in a double pendulums chain model, and DNA roto-torsional dynamics
- Modulational instability and energy localization of twisted DNA with solvent interaction
- NONLINEAR DYNAMICS OF LONG-RANGE PROTEIN-HELICOIDAL DNA INTERACTIONS
- Stationary solitary and kink solutions in the helicoidal Peyrard-Bishop model of DNA molecule
- Soliton excitations in an inhomogeneous DNA molecular chain
- A coupled base-rotator model for structure and dynamics of DNA -- local fluctuations in helical twist angles and topological solitons.
- Solitary waves in an inhomogeneous chain of \(\alpha\)-helical proteins
- Nonlinear molecular excitations in a completely inhomogeneous DNA chain
- Long-range interactions between adjacent and distant bases in a DNA and their impact on the ribonucleic acid polymerase-DNA dynamics
- Discrete instability in the DNA double helix
- Kink solitons in DNA
- Optical solitons of a cubic-quartic nonlinear Schrödinger equation with parabolic law nonlinearity in optical metamaterials
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