Assessing Population Differentiation and Isolation from Single-Nucleotide Polymorphism Data

DOI10.1111/1467-9868.00357zbMATH Open1067.62116OpenAlexW2081014442WikidataQ57259383 ScholiaQ57259383MaRDI QIDQ4672158FDOQ4672158

Authors: George Nicholson, Albert V. Smith, Frosti Jónsson, Ómar Gústafsson, Kári Stefánsson, Peter Donnelly 

Publication date: 29 April 2005

Published in: Journal of the Royal Statistical Society Series B: Statistical Methodology (Search for Journal in Brave)

Full work available at URL: https://doi.org/10.1111/1467-9868.00357

Recommendations

• Demographic inference using genetic data from a single individual: separating population size variation from population structure
• Multilocus estimation of genetic structure within populations
• DNA pooling and statistical tests for the detection of single nucleotide polymorphisms
• Spatial subdivision of populations and estimates of genetic variation
• Assessment of Population Structure and Its Effects on Genome-Wide Association Studies
• A Bayesian hierarchical model for analysis of single-nucleotide polymorphisms diversity in multilocus, multipopulation samples
• Estimating haplotype frequencies and standard errors for multiple single nucleotide polymorphisms
• Two‐Sample Tests for Comparing Intra‐Individual Genetic Sequence Diversity between Populations

zbMATH Keywords

Markov chain Monte Carlo methodsCoalescentDemographyBottleneckFixation indicesPopulation histories

Mathematics Subject Classification ID

Applications of statistics to biology and medical sciences; meta analysis (62P10) Numerical analysis or methods applied to Markov chains (65C40) Genetics and epigenetics (92D10)

Cites Work

• Title not available (Why is that?)
• The coalescent in an island model of population subdivision with variation among demes.

Cited In (13)

• Assessment of Population Structure and Its Effects on Genome-Wide Association Studies
• A beta-mixture model for assessing genetic population structure
• A general framework for moment-based analysis of genetic data
• Genetic diversity of microsatellite loci in hierarchically structured populations
• Estimation of the covariance structure from SNP allele frequencies
• The multivariate Wright-Fisher process with mutation: moment-based analysis and inference using a hierarchical beta model
• Demographic inference using genetic data from a single individual: separating population size variation from population structure
• The variance of pairwise nucleotide differences in two populations with migration
• Improving population-specific allele frequency estimates by adapting supplemental data: an empirical Bayes approach
• An approximate likelihood for genetic data under a model with recombination and population splitting
• Drawing inferences about the coancestry coefficient
• A Bayesian hierarchical model for analysis of single-nucleotide polymorphisms diversity in multilocus, multipopulation samples
• General theory for stochastic admixture graphs and \(F\)-statistics

This page was built for publication: Assessing Population Differentiation and Isolation from Single-Nucleotide Polymorphism Data

Report a bug (only for logged in users!)Click here to report a bug for this page (MaRDI item Q4672158)