Assessing Population Differentiation and Isolation from Single-Nucleotide Polymorphism Data

DOI10.1111/1467-9868.00357MaRDI QIDQ4672158zbMATH OpenOpenAlexWikidataFDO

Authors George Nicholson, Albert V. Smith, Frosti Jónsson, Ómar Gústafsson, Kári Stefánsson, Peter Donnelly

Publication date 29 April 2005

Published in Journal of the Royal Statistical Society Series B: Statistical Methodology (Search for Journal in Brave)

Full work available at URL https://doi.org/10.1111/1467-9868.00357

zbMATH Keywords

Markov chain Monte Carlo methodsCoalescentDemographyBottleneckFixation indicesPopulation histories

Mathematics Subject Classification ID

Applications of statistics to biology and medical sciences; meta analysis (62P10) Numerical analysis or methods applied to Markov chains (65C40) Genetics and epigenetics (92D10)

Recommendations

• Demographic inference using genetic data from a single individual: separating population size variation from population structure
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• A Bayesian hierarchical model for analysis of single-nucleotide polymorphisms diversity in multilocus, multipopulation samples
• Estimating haplotype frequencies and standard errors for multiple single nucleotide polymorphisms
• Two‐Sample Tests for Comparing Intra‐Individual Genetic Sequence Diversity between Populations

Cites work

• scientific article; zbMATH DE number 3657493 (Why is no real title available?)
• The coalescent in an island model of population subdivision with variation among demes.

Cited in

(13)

• Improving population-specific allele frequency estimates by adapting supplemental data: an empirical Bayes approach
• Genetic diversity of microsatellite loci in hierarchically structured populations
• Estimation of the covariance structure from SNP allele frequencies
• An approximate likelihood for genetic data under a model with recombination and population splitting
• Drawing inferences about the coancestry coefficient
• General theory for stochastic admixture graphs and \(F\)-statistics
• The variance of pairwise nucleotide differences in two populations with migration
• The multivariate Wright-Fisher process with mutation: moment-based analysis and inference using a hierarchical beta model
• A beta-mixture model for assessing genetic population structure
• Assessment of Population Structure and Its Effects on Genome-Wide Association Studies
• Demographic inference using genetic data from a single individual: separating population size variation from population structure
• A general framework for moment-based analysis of genetic data
• A Bayesian hierarchical model for analysis of single-nucleotide polymorphisms diversity in multilocus, multipopulation samples

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