Annealing Markov Chain Monte Carlo with Applications to Ancestral Inference

From MaRDI portal
Publication:4866614

DOI10.2307/2291325zbMath0850.62834OpenAlexW4246833555MaRDI QIDQ4866614

Charles J. Geyer, Elizabeth A. Thompson

Publication date: 17 July 1996

Full work available at URL: http://hdl.handle.net/11299/199610



Related Items

On‐line partitioning of the sample space in the regional adaptive algorithm, On Bayesian inference for the extended Plackett-Luce model, Testing independence of bivariate censored data using random walk on restricted permutation graph, Selection of Proposal Distributions for Multiple Importance Sampling, Tempered expectation-maximization algorithm for the estimation of discrete latent variable models, Markov chain decomposition for convergence rate analysis, Thermodynamic Bayesian model comparison, Approximate computations for binary Markov random fields and their use in Bayesian models, An evolutionary Monte Carlo algorithm for Bayesian block clustering of data matrices, Cauchy Markov random field priors for Bayesian inversion, Improving SAMC using smoothing methods: Theory and applications to Bayesian model selection problems, Critical behaviour of the random-anisotropy model in the strong-anisotropy limit, Bayesian networks: regenerative Gibbs samplings, Equi-energy sampling does not converge rapidly on the mean-field Potts model with three colors close to the critical temperature, An Effective Bayesian Neural Network Classifier with a Comparison Study to Support Vector Machine, Simulated tempering and swapping on mean-field models, Scalable Hyperparameter Selection for Latent Dirichlet Allocation, Monte Carlo likelihood inference for missing data models, Spectral gap of replica exchange Langevin diffusion on mixture distributions, An adaptively weighted stochastic gradient MCMC algorithm for Monte Carlo simulation and global optimization, Accelerating Monte Carlo molecular simulations by reweighting and reconstructing Markov chains: extrapolation of canonical ensemble averages and second derivatives to different temperature and density conditions, Weighted particle tempering, Unnamed Item, MOMCMC: an efficient Monte Carlo method for multi-objective sampling over real parameter space, On the Application of Markov Chain Monte Carlo Methods to Genetic Analyses on Complex Pedigrees, Polymer collapse of a self-avoiding trail model on a two-dimensional inhomogeneous lattice, Some remarks on replicated simulated annealing, Trajectory averaging for stochastic approximation MCMC algorithms, An MCMC approach to empirical Bayes inference and Bayesian sensitivity analysis via empirical processes, Improving the pattern reproducibility of multiple-point-based prior models using frequency matching, Likelihood-free parallel tempering, Accelerated simulated tempering, Markov chain Monte Carlo: can we trust the third significant figure?, Investigation of temperature parallel simulated annealing for optimizing continuous functions with application to hyperspectral tomography, A data cloning algorithm for computing maximum likelihood estimates in spatial generalized linear mixed models, Isoseparation and robustness in parametric Bayesian inference, The Gibbs-plaid biclustering model, Hierarchical multispectral galaxy decomposition using a MCMC algorithm with multiple temperature simulated annealing, A short history of Markov chain Monte Carlo: Subjective recollections from incomplete data, Infinite Swapping Algorithm for Training Restricted Boltzmann Machines, Parallel hierarchical sampling: a general-purpose interacting Markov chains Monte Carlo algorithm, Slice sampling. (With discussions and rejoinder), Global Sensitivity Analysis for Statistical Model Parameters, On implementation of the Gibbs sampler for estimating the accuracy of multiple diagnostic tests, Stochastic adaptive selection of weights in the simulated tempering algorithm, Equi-energy sampler with applications in statistical inference and statistical mechanics, Interacting neighbour point processes: Some models for clustering, Bayesian approach to the inverse problem in a light scattering application, Multicanonical MCMC for sampling rare events: an illustrative review, Honest exploration of intractable probability distributions via Markov chain Monte Carlo., Spectral gaps for a Metropolis-Hastings algorithm in infinite dimensions, Bayesian fractional posteriors, \(MCMC^{2}\) : a Monte Carlo code for multiply-charged clusters, Correlated domains in spin glasses, Construction of binary multi-grid Markov random field prior models from training images, Small-world MCMC and convergence to multi-modal distributions: from slow mixing to fast mixing, Bayesian registration of functions and curves, A Bayesian approach to seriation problems in archaeology, Posterior analysis of latent competing risk models by parallel tempering, Efficient MCMC estimation of discrete distributions, Simulating normalizing constants: From importance sampling to bridge sampling to path sampling, Bayesian model averaging in the instrumental variable regression model, Automated Redistricting Simulation Using Markov Chain Monte Carlo, Inferring Gene Ancestry: Estimating Gene Descent, Proposal adaptation in simulated annealing for continuous optimization problems, Discovering disease genes: multipoint linkage analysis via a new Markov chain Monte Carlo approach, A Monte Carlo Newton-Raphson procedure for maximizing complex likelihoods on pedigree data., Gibbs point processes for studying the development of spatial-temporal stochastic processes., SMMP v. 3.0-simulating proteins and protein interactions in Python and Fortran, Unnamed Item, Clustering multivariate data using factor analytic Bayesian mixtures with an unknown number of components, Overfitting Bayesian mixtures of factor analyzers with an unknown number of components, Evolutionary product unit based neural networks for regression, Non‐parametric Bayesian Inference for Integrals with respect to an Unknown Finite Measure, Generalized parallel sampling, Accelerating parallel tempering: Quantile tempering algorithm (QuanTA), The swapping algorithm for the Hopfield model with two patterns, A Repelling–Attracting Metropolis Algorithm for Multimodality, Tuning tempered transitions, Smooth functional tempering for nonlinear differential equation models, Interacting multiple try algorithms with different proposal distributions, Parallel tempering with equi-energy moves, The Self-Multiset Sampler, Incremental Mixture Importance Sampling With Shotgun Optimization, Semiparametric Bayesian circular statistics, Conditions for rapid mixing of parallel and simulated tempering on multimodal distributions, Hybrid parallel tempering and simulated annealing method, Perfect Forward Simulation via Simulated Tempering, Geometric integrators and the Hamiltonian Monte Carlo method, Monte Carlo Methods for Lattice Polygons, A Bayesian Model for Measurement Errors in Diagnosis of Rheumatoid Arthritis, Monte Carlo study of the \(\Theta\)-point for collapsing trees, Real-time inverse solution of the composites’ cure heat transfer problem under uncertainty, Importance sampling for families of distributions, Informed sub-sampling MCMC: approximate Bayesian inference for large datasets, Bayesian inversion by parallel interacting Markov chains, Contagion distributions for defining disease clustering in time, On swapping and simulated tempering algorithms., Unnamed Item, Global optimization and finite temperature simulations of atomic clusters: Use of Xe\(_{n}\)Ar\(_{m}\) clusters as test systems, Exploring dependence between categorical variables: benefits and limitations of using variable selection within Bayesian clustering in relation to log-linear modelling with interaction terms, Bayesian analysis of nested logit model by Markov chain Monte Carlo., Mixing times for the Swapping Algorithm on the Blume-Emery-Griffiths model, Random partition models and complementary clustering of Anglo-Saxon place-names