Bayesian registration of functions and curves

DOI10.1214/15-BA957zbMATH Open1357.62151arXiv1311.2105OpenAlexW1605612091WikidataQ58419199 ScholiaQ58419199MaRDI QIDQ516477FDOQ516477

Wen Cheng, Xianzheng Huang, Ian L. Dryden

Publication date: 14 March 2017

Published in: Bayesian Analysis (Search for Journal in Brave)

Abstract: Bayesian analysis of functions and curves is considered, where warping and other geometrical transformations are often required for meaningful comparisons. We focus on two applications involving the classification of mouse vertebrae shape outlines and the alignment of mass spectrometry data in proteomics. The functions and curves of interest are represented using the recently introduced square root velocity function, which enables a warping invariant elastic distance to be calculated in a straightforward manner. We distinguish between various spaces of interest: the original space, the ambient space after standardizing, and the quotient space after removing a group of transformations. Using Gaussian process models in the ambient space and Dirichlet priors for the warping functions, we explore Bayesian inference for curves and functions. Markov chain Monte Carlo algorithms are introduced for simulating from the posterior, including simulated tempering for multimodal posteriors. We also compare ambient and quotient space estimators for mean shape, and explain their frequent similarity in many practical problems using a Laplace approximation. A simulation study is carried out, as well as shape classification of the mouse vertebra outlines and practical alignment of the mass spectrometry functions.

Full work available at URL: https://arxiv.org/abs/1311.2105

zbMATH Keywords

shapeGaussian processwarpambient spaceDirichletquotient space

Mathematics Subject Classification ID

Bayesian inference (62F15) Nonparametric estimation (62G05)

Cites Work

• Functional data analysis.
• Asymptotic Statistics
• Bayesian Measures of Model Complexity and Fit
• Interpolation of spatial data. Some theory for kriging
• Curve alignment by moments
• Pairwise curve synchronization for functional data
• Sampling the Dirichlet Mixture Model with Slices
• Shape Manifolds, Procrustean Metrics, and Complex Projective Spaces
• Title not available (Why is that?)
• Title not available (Why is that?)
• Computable Elastic Distances Between Shapes
• Curve Registration
• Statistical tools to analyze data representing a sample of curves
• Title not available (Why is that?)
• Title not available (Why is that?)
• Large sample theory of intrinsic and extrinsic sample means on manifolds. I
• Annealing Markov Chain Monte Carlo with Applications to Ancestral Inference
• Slice sampling mixture models
• Gibbs Sampling Methods for Stick-Breaking Priors
• Riemannian center of mass and mollifier smoothing
• Title not available (Why is that?)
• Bayesian Hierarchical Curve Registration
• An adaptive truncation method for inference in Bayesian nonparametric models
• The Riemannian structure of Euclidean shape spaces: A novel environment for statistics
• The statistical analysis of shape data
• General shape distributions in a plane
• Curve Registration by Local Regression
• Proteomics profiles from mass spectrometry
• Analysis of proteomics data: Bayesian alignment of functions
• Bayesian registration of functions and curves
• Bayesian matching of unlabeled point sets using Procrustes and configuration models
• A stochastic calculus approach to the shape distribution induced by a complex normal model
• Size and shape analysis of landmark data
• Title not available (Why is that?)
• Title not available (Why is that?)
• Bayesian matching of unlabeled marked point sets using random fields, with an application to molecular alignment

Cited In (24)

• Comments on: ``Shape-based functional data analysis
• Bayesian Curve Registration of Functional Data
• A stochastic process representation for time warping functions
• A Bayesian approach to statistical shape analysis via the projected normal distribution
• A Bayesian method for simultaneous registration and clustering of functional observations
• Elastic statistical shape analysis of biological structures with case studies: a tutorial
• Parallel tempering strategies for model-based landmark detection on shapes
• A hierarchical curve-based approach to the analysis of manifold data
• Simultaneous Registration and Clustering for Multidimensional Functional Data
• Analysis of shape data: from landmarks to elastic curves
• Model-based joint curve registration and classification
• Fast matrix computations for functional additive models
• Analysis of proteomics data: Bayesian alignment of functions
• Analysis of spike train data: classification and Bayesian alignment
• Bayesian registration of functions and curves
• Template Priors in Bayesian Curve Registration
• Multimodal Bayesian registration of noisy functions using Hamiltonian Monte Carlo
• Distribution on Warp Maps for Alignment of Open and Closed Curves
• Title not available (Why is that?)
• Nonlinear mixed effects modeling and warping for functional data using B-splines
• Functional clustering of fictional narratives using Vonnegut curves
• Curve registration by nonparametric goodness-of-fit testing
• Automatic Detection and Uncertainty Quantification of Landmarks on Elastic Curves
• Bayesian linear size-and-shape regression with applications to face data

Uses Software

• fda (R)
• LIBSVM
• shapes

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