Markov chain Monte Carlo: can we trust the third significant figure?
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Abstract: Current reporting of results based on Markov chain Monte Carlo computations could be improved. In particular, a measure of the accuracy of the resulting estimates is rarely reported. Thus we have little ability to objectively assess the quality of the reported estimates. We address this issue in that we discuss why Monte Carlo standard errors are important, how they can be easily calculated in Markov chain Monte Carlo and how they can be used to decide when to stop the simulation. We compare their use to a popular alternative in the context of two examples.
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Cites work
- scientific article; zbMATH DE number 3815002 (Why is no real title available?)
- scientific article; zbMATH DE number 1350773 (Why is no real title available?)
- scientific article; zbMATH DE number 597902 (Why is no real title available?)
- scientific article; zbMATH DE number 720750 (Why is no real title available?)
- scientific article; zbMATH DE number 1911984 (Why is no real title available?)
- scientific article; zbMATH DE number 849922 (Why is no real title available?)
- scientific article; zbMATH DE number 854710 (Why is no real title available?)
- Annealing Markov Chain Monte Carlo with Applications to Ancestral Inference
- Computable bounds for geometric convergence rates of Markov chains
- Convergence control methods for Markov chain Monte Carlo algorithms
- Convergence of Slice Sampler Markov Chains
- Efficiency and Convergence Properties of Slice Samplers
- Estimating the asymptotic variance with batch means
- Estimating the risk of a crop epidemic from coincident spatio-temporal processes
- Fixed-Width Output Analysis for Markov Chain Monte Carlo
- General state space Markov chains and MCMC algorithms
- Geometric Ergodicity of van Dyk and Meng's Algorithm for the Multivariate Student'stModel
- Geometric ergodicity of Gibbs and block Gibbs samplers for a hierarchical random effects model
- Geometric ergodicity of Metropolis algorithms
- Geometric ergodicity of Metropolis-Hastings algorithms for conditional simulation in generalized linear mixed models
- Honest exploration of intractable probability distributions via Markov chain Monte Carlo.
- Inference from iterative simulation using multiple sequences
- Markov Chain Monte Carlo Convergence Diagnostics: A Comparative Review
- Markov chains and stochastic stability
- Markov chains for exploring posterior distributions. (With discussion)
- Minorization Conditions and Convergence Rates for Markov Chain Monte Carlo
- Monte Carlo methods in Bayesian computation
- Monte Carlo strategies in scientific computing
- On the Markov chain central limit theorem
- Polynomial convergence rates of Markov chains
- Polynomial ergodicity of Markov transition kernels.
- Possible biases induced by mcmc convergence diagnostics
- Practical drift conditions for subgeometric rates of convergence.
- Rates of convergence of the Hastings and Metropolis algorithms
- Regeneration in Markov Chain Samplers
- Simulation Output Analysis Using Standardized Time Series
- Sufficient burn-in for Gibbs samplers for a hierarchical random effects model.
- The Reporting of Computation-Based Results in Statistics
- The asymptotic validity of sequential stopping rules for stochastic simulations
- V-subgeometric ergodicity for a Hastings-Metropolis algorithm
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- Improving the convergence properties of the data augmentation algorithm with an application to Bayesian mixture modeling
- Geometric ergodicity of the Gibbs sampler for Bayesian quantile regression
- The quantile probability model
- A comparative evaluation of stochastic-based inference methods for Gaussian process models
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- Ties in one block comparison experiments: a generalization of the Mallows-Bradley-Terry ranking model
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- Geometric ergodicity and scanning strategies for two-component Gibbs samplers
- Spatial factor modeling: A Bayesian matrix‐normal approach for misaligned data
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- A spatially varying stochastic differential equation model for animal movement
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- AovBay: an \textsf{R} package for application and visualization of parametric non-parametric and Bayesian ANOVA
- Adaptive multiple importance sampling for Gaussian processes
- Batch size selection for variance estimators in MCMC
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- Efficient Bayesian inference in generalized inverse gamma processes for stochastic volatility
- Modeling space-time dynamics of aerosols using satellite data and atmospheric transport model output
- Efficient shape-constrained inference for the autocovariance sequence from a reversible Markov chain
- Some models are useful, but how do we know which ones? Towards a unified Bayesian model taxonomy
- Comparisons of three approaches for discrete conditional models
- Bayesian variable selection for finite mixture model of linear regressions
- On Monte Carlo methods for Bayesian multivariate regression models with heavy-tailed errors
- Bayesian analysis of circular distributions based on non-negative trigonometric sums
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- The Bayesian simulation study (BASIS) framework for simulation studies in statistical and methodological research
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- An attraction-repulsion point process model for respiratory syncytial virus infections
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- Quantifying uncertainty in parameter estimates for stochastic models of collective cell spreading using approximate Bayesian computation
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