Quantifying uncertainty in parameter estimates for stochastic models of collective cell spreading using approximate Bayesian computation
DOI10.1016/J.MBS.2015.02.010zbMATH Open1371.92033OpenAlexW1964327423WikidataQ41278158 ScholiaQ41278158MaRDI QIDQ494470FDOQ494470
Authors: Brenda N. Vo, A. N. Pettitt, Matthew J. Simpson, C. C. Drovandi 
Publication date: 1 September 2015
Published in: Mathematical Biosciences (Search for Journal in Brave)
Full work available at URL: https://eprints.qut.edu.au/82534/1/Vo_MathBiosci_2015.pdf
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approximate Bayesian computationcell proliferationcell diffusivityrandom walk modelcollective cell spreading
Bayesian inference (62F15) Applications of statistics to biology and medical sciences; meta analysis (62P10) Computational methods for problems pertaining to biology (92-08) Cell movement (chemotaxis, etc.) (92C17)
Cites Work
- Markov chain Monte Carlo: can we trust the third significant figure?
- Mathematical modeling of corneal epithelial wound healing
- Constructing Summary Statistics for Approximate Bayesian Computation: Semi-Automatic Approximate Bayesian Computation
- Inference for Stereological Extremes
- Sequential Monte Carlo without likelihoods
- Bayesian inference and the parametric bootstrap
- Mathematical biology. Vol. 1: An introduction.
- Estimation of parameters for macroparasite population evolution using approximate Bayesian computation
- Bayesian experimental design for models with intractable likelihoods
- A continuum approximation to an off-lattice individual-cell based model of cell migration and adhesion
- Multi-scale modeling of a wound-healing cell migration assay
- Quantifying glioma cell growth and invasion in vitro
- Discrete and continuous models for tissue growth and shrinkage
- Quantifying intrinsic and extrinsic noise in gene transcription using the linear noise approximation: an application to single cell data
- Integrating approximate Bayesian computation with complex agent-based models for cancer research
Cited In (24)
- Extended logistic growth model for heterogeneous populations
- Parameter Estimation in an SPDE Model for Cell Repolarization
- Continuum descriptions of spatial spreading for heterogeneous cell populations: theory and experiment
- Reliable and efficient parameter estimation using approximate continuum limit descriptions of stochastic models
- Revisiting the Fisher-Kolmogorov-Petrovsky-Piskunov equation to interpret the spreading-extinction dichotomy
- Critical length for the spreading-vanishing dichotomy in higher dimensions
- Inferring parameters for a lattice-free model of cell migration and proliferation using experimental data
- An approximate likelihood perspective on ABC methods
- Rejoinder
- Reproducibility of scratch assays is affected by the initial degree of confluence: experiments, modelling and model selection
- Approximate Bayesian computation reveals the importance of repeated measurements for parameterising cell-based models of growing tissues
- A Bayesian computational approach to explore the optimal duration of a cell proliferation assay
- An approximate Bayesian computation approach for embryonic astrocyte migration model reduction
- Calibration of agent based models for monophasic and biphasic tumour growth using approximate Bayesian computation
- Multilevel rejection sampling for approximate Bayesian computation
- Bayesian Synthetic Likelihood
- Rapid Bayesian Inference for Expensive Stochastic Models
- Using experimental data and information criteria to guide model selection for reaction-diffusion problems in mathematical biology
- Bayesian inference of agent-based models: a tool for studying kidney branching morphogenesis
- Logistic proliferation of cells in scratch assays is delayed
- Spectral density-based and measure-preserving ABC for partially observed diffusion processes. An illustration on Hamiltonian SDEs
- Bayesian parametric bootstrap for models with intractable likelihoods
- Efficient Bayesian Synthetic Likelihood With Whitening Transformations
- Sequential Bayesian experimental design for implicit models via mutual information
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