Reproducibility of scratch assays is affected by the initial degree of confluence: experiments, modelling and model selection
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Publication:304833
DOI10.1016/J.JTBI.2015.10.040zbMATH Open1343.92074OpenAlexW2285581648WikidataQ38813565 ScholiaQ38813565MaRDI QIDQ304833FDOQ304833
Authors: Wang Jin, Esha T. Shah, Catherine J. Penington, Scott W. McCue, Lisa K. Chopin, Matthew J. Simpson 
Publication date: 26 August 2016
Published in: Journal of Theoretical Biology (Search for Journal in Brave)
Full work available at URL: https://doi.org/10.1016/j.jtbi.2015.10.040
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Cites Work
- Quantifying uncertainty in parameter estimates for stochastic models of collective cell spreading using approximate Bayesian computation
- Title not available (Why is that?)
- Title not available (Why is that?)
- An Interior Trust Region Approach for Nonlinear Minimization Subject to Bounds
- A one-dimensional model of cell diffusion and aggregation, incorporating volume filling and cell-to-cell adhesion
- An asymptotic solution for traveling waves of a nonlinear-diffusion Fisher's equation
- Analysis of logistic growth models
- Travelling waves in a wound healing assay.
- Merging traveling waves for the porous-Fisher's equation
- Multi-scale modeling of a wound-healing cell migration assay
- Assessing the ability of the 2D Fisher-KPP equation to model cell-sheet wound closure
- Patient-specific mathematical neuro-oncology: using a simple proliferation and invasion tumor model to inform clinical practice
- Fisher equation with density-dependent diffusion: special solutions
- Analytical solutions to Fisher's equation with time-variable coefficients
Cited In (31)
- Extended logistic growth model for heterogeneous populations
- Learning partial differential equations for biological transport models from noisy spatio-temporal data
- Continuum descriptions of spatial spreading for heterogeneous cell populations: theory and experiment
- Morphological stability for in silico models of avascular tumors
- Investigation of a structured Fisher's equation with applications in biochemistry
- Modelling count data with partial differential equation models in biology
- Age structure can account for delayed logistic proliferation of scratch assays
- Front stability of infinitely steep travelling waves in population biology
- Critical length for the spreading-vanishing dichotomy in higher dimensions
- Discrete and continuum approximations for collective cell migration in a scratch assay with cell size dynamics
- A sharp-front moving boundary model for malignant invasion
- Learning equations from biological data with limited time samples
- A free boundary model of epithelial dynamics
- Continuum approximations for lattice-free multi-species models of collective cell migration
- Modeling keratinocyte wound healing dynamics: cell-cell adhesion promotes sustained collective migration
- A Bayesian computational approach to explore the optimal duration of a cell proliferation assay
- Scratch assay microscopy: a reaction-diffusion equation approach for common instruments and data
- Choosing an appropriate modelling framework for analysing multispecies co-culture cell biology experiments
- Parameter identifiability and model selection for sigmoid population growth models
- Using experimental data and information criteria to guide model selection for reaction-diffusion problems in mathematical biology
- Hole-closing model reveals exponents for nonlinear degenerate diffusivity functions in cell biology
- Logistic proliferation of cells in scratch assays is delayed
- Survival, extinction, and interface stability in a two-phase moving boundary model of biological invasion
- Filtered partial differential equations: a robust surrogate constraint in physics-informed deep learning framework
- A continuum mathematical model of substrate-mediated tissue growth
- A Genuinely Hybrid, Multiscale 3D Cancer Invasion and Metastasis Modelling Framework
- Population dynamics with threshold effects give rise to a diverse family of Allee effects
- Are \textit{in vitro} estimates of cell diffusivity and cell proliferation rate sensitive to assay geometry?
- Traveling waves, blow‐up, and extinction in the Fisher–Stefan model
- Invading and receding sharp-fronted travelling waves
- Mathematical model of tumour spheroid experiments with real-time cell cycle imaging
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