Reproducibility of scratch assays is affected by the initial degree of confluence: experiments, modelling and model selection
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Publication:304833
DOI10.1016/j.jtbi.2015.10.040zbMath1343.92074OpenAlexW2285581648WikidataQ38813565 ScholiaQ38813565MaRDI QIDQ304833
Wang Jin, Matthew J. Simpson, Catherine J. Penington, Lisa K. Chopin, Scott W. McCue, Esha T. Shah
Publication date: 26 August 2016
Published in: Journal of Theoretical Biology (Search for Journal in Brave)
Full work available at URL: https://doi.org/10.1016/j.jtbi.2015.10.040
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Cites Work
- Unnamed Item
- Unnamed Item
- Analytical solutions to Fisher's equation with time-variable coefficients
- Quantifying uncertainty in parameter estimates for stochastic models of collective cell spreading using approximate Bayesian computation
- A one-dimensional model of cell diffusion and aggregation, incorporating volume filling and cell-to-cell adhesion
- An asymptotic solution for traveling waves of a nonlinear-diffusion Fisher's equation
- Analysis of logistic growth models
- Travelling waves in a wound healing assay.
- Merging traveling waves for the porous-Fisher's equation
- Multi-scale modeling of a wound-healing cell migration assay
- Assessing the ability of the 2D Fisher-KPP equation to model cell-sheet wound closure
- Patient-specific mathematical neuro-oncology: using a simple proliferation and invasion tumor model to inform clinical practice
- Fisher equation with density-dependent diffusion: special solutions
- An Interior Trust Region Approach for Nonlinear Minimization Subject to Bounds
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