Using experimental data and information criteria to guide model selection for reaction-diffusion problems in mathematical biology
From MaRDI portal
Publication:2417536
DOI10.1007/S11538-019-00589-XzbMATH Open1415.92041OpenAlexW2950278368WikidataQ91993831 ScholiaQ91993831MaRDI QIDQ2417536FDOQ2417536
Authors: David J. Warne, Ruth E. Baker, Matthew J. Simpson 
Publication date: 12 June 2019
Published in: Bulletin of Mathematical Biology (Search for Journal in Brave)
Full work available at URL: https://doi.org/10.1007/s11538-019-00589-x
Recommendations
- Estimation of parameter distributions for reaction-diffusion equations with competition using aggregate spatiotemporal data
- Quantifying uncertainty in parameter estimates for stochastic models of collective cell spreading using approximate Bayesian computation
- Modelling the movement of interacting cell populations: a moment dynamics approach
- Selection and assessment of phenomenological models of tumor growth
- Discrete and continuous approaches to modeling cell movement in the presence of a foreign stimulus
Bayesian inference (62F15) Applications of statistics to biology and medical sciences; meta analysis (62P10) Reaction-diffusion equations (35K57) Cell movement (chemotaxis, etc.) (92C17) Cell biology (92C37)
Cites Work
- Estimating the dimension of a model
- Bayesian data analysis.
- Bayesian Measures of Model Complexity and Fit
- A new look at the statistical model identification
- Title not available (Why is that?)
- Title not available (Why is that?)
- On Information and Sufficiency
- A Mathematical Theory of Communication
- Model uncertainty
- Can the strengths of AIC and BIC be shared? A conflict between model indentification and regression estimation
- Sequential Monte Carlo without likelihoods
- The Selection of Prior Distributions by Formal Rules
- Science and Statistics
- Title not available (Why is that?)
- Handbook of Approximate Bayesian Computation
- The Deviance Information Criterion: 12 Years on
- Prior distributions for objective Bayesian analysis
- Mathematical biology. Vol. 1: An introduction.
- Bayesian Experimental Design for Models with Intractable Likelihoods
- RANDOM DISPERSAL IN THEORETICAL POPULATIONS
- The case for objective Bayesian analysis
- On the Fisher–KPP equation with fast nonlinear diffusion
- Title not available (Why is that?)
- Analysis of logistic growth models
- Bayesian inference of agent-based models: a tool for studying kidney branching morphogenesis
- Travelling waves in a wound healing assay.
- Merging traveling waves for the porous-Fisher's equation
- Multi-scale modeling of a wound-healing cell migration assay
- Patient-specific mathematical neuro-oncology: using a simple proliferation and invasion tumor model to inform clinical practice
- When does colonisation of a semi-arid hillslope generate vegetation patterns?
- Reproducibility of scratch assays is affected by the initial degree of confluence: experiments, modelling and model selection
- Fisher equation with density-dependent diffusion: special solutions
- Adaptive dynamics on an environmental gradient that changes over a geological time-scale
- Spatio-temporal models of lymphangiogenesis in wound healing
- Adding adhesion to a chemical signaling model for somite formation
- Title not available (Why is that?)
- Objections to Bayesian statistics
- Travelling wave solutions to a haptotaxis-dominated model of malignant invasion
- Mathematical model of hyperbaric oxygen therapy applied to chronic diabetic wounds
- Why Isn't Everyone a Bayesian?
- A comparison and catalog of intrinsic tumor growth models
- Looking inside an invasion wave of cells using continuum models: proliferation is the key
- Evolutionary distributions and competition by way of reaction-diffusion and by way of convolution
- Modeling keratinocyte wound healing dynamics: cell-cell adhesion promotes sustained collective migration
- Rejoinder: ``Objections to Bayesian statistics
- Logistic proliferation of cells in scratch assays is delayed
- Multilevel rejection sampling for approximate Bayesian computation
- A Review of Modern Computational Algorithms for Bayesian Optimal Design
- A Bayesian computational approach to explore the optimal duration of a cell proliferation assay
- A Bayesian sequential learning framework to parameterise continuum models of melanoma invasion into human skin
Cited In (23)
- Weak SINDy for partial differential equations
- Evaluation of multitype mathematical models for CFSE-labeling experiment data
- Model Comparison and Uncertainty Quantification in Tumor Growth
- The effect of geometry on survival and extinction in a moving-boundary problem motivated by the Fisher-KPP equation
- A sharp-front moving boundary model for malignant invasion
- Learning equations from biological data with limited time samples
- An approximate Bayesian computation approach for embryonic astrocyte migration model reduction
- Scratch assay microscopy: a reaction-diffusion equation approach for common instruments and data
- Rapid Bayesian Inference for Expensive Stochastic Models
- Invasiveness of a growth-migration system in a two-dimensional percolation cluster: a stochastic mathematical approach
- Parameter identifiability and model selection for sigmoid population growth models
- Hole-closing model reveals exponents for nonlinear degenerate diffusivity functions in cell biology
- Weak SINDy: Galerkin-Based Data-Driven Model Selection
- Profile likelihood-based parameter and predictive interval analysis guides model choice for ecological population dynamics
- A continuum mathematical model of substrate-mediated tissue growth
- Revisiting the Fisher–Kolmogorov–Petrovsky–Piskunov equation to interpret the spreading–extinction dichotomy
- CRITICAL LENGTH FOR THE SPREADING–VANISHING DICHOTOMY IN HIGHER DIMENSIONS
- Population dynamics with threshold effects give rise to a diverse family of allee effects
- Exact sharp-fronted travelling wave solutions of the Fisher-KPP equation
- Traveling waves, blow‐up, and extinction in the Fisher–Stefan model
- On data space selection and data processing for parameter identification in a reaction-diffusion model based on FRAP experiments
- Bespoke Turing systems
- Invading and receding sharp-fronted travelling waves
Uses Software
This page was built for publication: Using experimental data and information criteria to guide model selection for reaction-diffusion problems in mathematical biology
Report a bug (only for logged in users!)Click here to report a bug for this page (MaRDI item Q2417536)
