Gene expression distribution deconvolution in single-cell RNA sequencing

DOI10.1073/PNAS.1721085115MaRDI QIDQ4967446zbMATHOpenAlexWikidataFDO

Authors

Publication date 3 July 2019

Published in Proceedings of the National Academy of Sciences (Search for Journal in Brave)

Full work available at URL https://doi.org/10.1073/pnas.1721085115

Mathematics Subject Classification ID

Applications of statistics to biology and medical sciences; meta analysis (62P10) Protein sequences, DNA sequences (92D20)

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Cited in

(17)

• Data denoising and post-denoising corrections in single cell RNA sequencing
• Spike-and-slab Lasso biclustering
• Analysis of a single cell RNA-seq workflow by random matrix theory methods
• Geometric structure guided model and algorithms for complete deconvolution of gene expression data
• A compositional model to assess expression changes from single-cell RNA-seq data
• Zero-inflated quantile rank-score based test (ZIQRank) with application to scRNA-seq differential gene expression analysis
• Assessing Markovian and delay models for single-nucleus RNA sequencing
• A unified statistical framework for single cell and bulk RNA sequencing data
• A survey on normalization of single-cell RNA sequencing
• Discussion of “Exponential-Family Embedding With Application to Cell Developmental Trajectories for Single-Cell RNA-Seq Data”
• Supervised Adversarial Alignment of Single-Cell RNA-seq Data
• Kinetic Foundation of the Zero-Inflated Negative Binomial Model for Single-Cell RNA Sequencing Data
• Detection of differentially expressed genes in discrete single‐cell RNA sequencing data using a hurdle model with correlated random effects
• A fiducial approach to the nonparametric deconvolution problem: the discrete case
• scSimseq: a nonparametric simulation method for single-cell RNA data
• scMerge leverages factor analysis, stable expression, and pseudoreplication to merge multiple single-cell RNA-seq datasets
• A nearest-neighbor based nonparametric test for viral remodeling in heterogeneous single-cell proteomic data

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