A Bayesian extension of the hypergeometric test for functional enrichment analysis
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Publication:4979230
DOI10.1111/biom.12122zbMath1419.62317WikidataQ38273411 ScholiaQ38273411MaRDI QIDQ4979230
Publication date: 17 June 2014
Published in: Biometrics (Search for Journal in Brave)
Full work available at URL: http://europepmc.org/articles/pmc3954234
gene ontology; non-central hypergeometric distribution; functional enrichment analysis; hypergeometric \(P\)-value; modular enrichment analysis
62P10: Applications of statistics to biology and medical sciences; meta analysis
62F15: Bayesian inference
92C40: Biochemistry, molecular biology
92D10: Genetics and epigenetics
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Cites Work
- Bayes and empirical-Bayes multiplicity adjustment in the variable-selection problem
- Incorporating biological information into linear models: a Bayesian approach to the selection of pathways and genes
- Random-set methods identify distinct aspects of the enrichment signal in gene-set analysis
- On testing the significance of sets of genes
- Bayesian joint modeling of multiple gene networks and diverse genomic data to identify target genes of a transcription factor
- Significance analysis of microarrays applied to the ionizing radiation response
- A Direct Approach to False Discovery Rates
- Properties of the Extended Hypergeometric Distribution
- Defining functional distance using manifold embeddings of gene ontology annotations
- Sampling Methods for Wallenius' and Fisher's Noncentral Hypergeometric Distributions
- Proper multivariate conditional autoregressive models for spatial data analysis
- Detecting differential gene expression with a semiparametric hierarchical mixture method
- A Bayesian Mixture Model for Differential Gene Expression