Parallelizing the cellular Potts model on graphics processing units

DOI10.1016/J.CPC.2010.12.011MaRDI QIDQ634058zbMATHOpenAlexFDO

Authors José Juan Tapia, Roshan M. D'Souza

Publication date 2 August 2011

Published in Computer Physics Communications (Search for Journal in Brave)

Full work available at URL https://doi.org/10.1016/j.cpc.2010.12.011

zbMATH Keywords

computational biologymorphogenesisparallel computingGPGPU

Mathematics Subject Classification ID

Computer graphics; computational geometry (digital and algorithmic aspects) (68U05) Computing methodologies for image processing (68U10) Biophysics (92C05) Cell biology (92C37)

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Cites work

• Mersenne twister

Cited in

(10)

• A Parallel Implementation of the Cellular Potts Model for Simulation of Cell-Based Morphogenesis
• Performance potential for simulating spin models on GPU
• On the use of multiple heterogeneous devices to speedup the execution of a computational model of the human immune system
• An efficient cellular Potts model algorithm that forbids cell fragmentation
• Parallel tools and techniques for biological cells modelling
• Multi-core CPU or GPU-accelerated multiscale modeling for biomolecular complexes
• Fast simulation of Conway's Game of Life using bitwise parallel bulk computation on a GPU
• Octree-based, GPU implementation of a continuous cellular automaton for the simulation of complex, evolving surfaces
• Parallel simulation of two-dimensional Ising models using probabilistic cellular automata
• Reaction-diffusion model Monte Carlo simulations on the GPU

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Uses Software

• MersenneTwister
• OpenCL

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