Parameter estimation with a novel gradient-based optimization method for biological lattice-gas cellular automaton models

DOI10.1007/S00285-010-0366-4MaRDI QIDQ659007zbMATH OpenOpenAlexWikidataFDO

Authors Carsten Mente, Ina Prade, Lutz Brusch, Georg Breier, A. Deutsch

Publication date 9 February 2012

Published in Journal of Mathematical Biology (Search for Journal in Brave)

Full work available at URL https://doi.org/10.1007/s00285-010-0366-4

zbMATH Keywords

Algorithmic differentiationAngiogenic pattern formation

Mathematics Subject Classification ID

Population dynamics (general) (92D25) Numerical methods based on nonlinear programming (49M37) Dynamic lattice systems (kinetic Ising, etc.) and systems on graphs in time-dependent statistical mechanics (82C20) Statistical mechanics of gases (82D05) Developmental biology, pattern formation (92C15)

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Cites work

• scientific article; zbMATH DE number 194544 (Why is no real title available?)
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• scientific article; zbMATH DE number 1456803 (Why is no real title available?)
• Algorithm 755: ADOL-C
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• Handbook of global optimization
• Lattice gas cellular automation model for rippling and aggregation in myxobacteria
• Line search algorithms with guaranteed sufficient decrease
• Monte Carlo sampling methods using Markov chains and their applications
• Numerical analysis. A mathematical introduction. Transl. from the French by John Taylor
• Optimization by simulated annealing
• Optimization. Algorithms and consistent approximations
• Prediction of traveling front behavior in a lattice-gas cellular automaton model for tumor invasion
• Quasi-Newton Methods, Motivation and Theory
• Shifted limited-memory variable metric methods for large-scale unconstrained optimization
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• The chemical basis of morphogenesis
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Cited in

(2)

• Cellular automaton modeling of tumor invasion
• Soluble VEGFR1 signaling guides vascular patterns into dense branching morphologies

Describes a project that uses

Uses Software

• ADOL-C

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