Fast computation of minimal elementary decompositions of metabolic flux vectors

DOI10.1016/J.AUTOMATICA.2011.01.011zbMATH Open1235.93267OpenAlexW2112223504MaRDI QIDQ665165FDOQ665165

Authors: Francisca Zamorano, Alain Vande Wouwer, Georges Bastin, Raphaël M. Jungers, Vincent D. Blondel 

Publication date: 5 March 2012

Published in: Automatica (Search for Journal in Brave)

Full work available at URL: https://doi.org/10.1016/j.automatica.2011.01.011

Recommendations

• On the geometry of elementary flux modes
• Finding MEMo: minimum sets of elementary flux modes
• Flux modules in metabolic networks
• On dynamically generating relevant elementary flux modes in a metabolic network using optimization
• Reaction routes in biochemical reaction systems: algebraic properties, validated calculation procedure and example from nucleotide metabolism

zbMATH Keywords

modeling and identificationelementary flux modesanimal cellsmetabolic engineering

Mathematics Subject Classification ID

Systems biology, networks (92C42)

Cites Work

• Title not available (Why is that?)
• Geometric algorithms and combinatorial optimization
• Sparse nonnegative solution of underdetermined linear equations by linear programming
• Fast computation of minimal elementary decompositions of metabolic flux vectors

Cited In (6)

• Robustness analysis of elementary flux modes generated by column generation
• Fast computation of minimal elementary decompositions of metabolic flux vectors
• Finding MEMo: minimum sets of elementary flux modes
• On the geometry of elementary flux modes
• On dynamically generating relevant elementary flux modes in a metabolic network using optimization
• Invariant manifold methods for metabolic model reduction

This page was built for publication: Fast computation of minimal elementary decompositions of metabolic flux vectors

Report a bug (only for logged in users!)Click here to report a bug for this page (MaRDI item Q665165)