A phase transition for the minimum free energy of secondary structures of a random RNA
DOI10.1006/AAMA.1996.0502zbMATH Open0869.92006OpenAlexW1983186336MaRDI QIDQ675899FDOQ675899
Authors: Momiao Xiong, Michael S. Waterman 
Publication date: 11 March 1997
Published in: Advances in Applied Mathematics (Search for Journal in Brave)
Full work available at URL: https://semanticscholar.org/paper/abc1eeb14b910accbedc64963318a39844af6844
Recommendations
- Asymptotic expected number of base pairs in optimal secondary structure for random RNA using the Nussinov--Jacobson energy model
- Moments of the Boltzmann distribution for RNA secondary structures
- Expected distance between terminal nucleotides of RNA secondary structures
- Unified approach to partition functions of RNA secondary structures
- General combinatorics of RNA secondary structure
phase transitionbulgesfree energydistributional propertiesPoisson approximationloopslinear growthlogarithmic growthminimum free energybasepairsrandom RNA secondary structuresingle-stranded RNA
Cites Work
- Two moments suffice for Poisson approximations: The Chen-Stein method
- Title not available (Why is that?)
- Rapid and accurate estimates of statistical significance for sequence data base searches.
- Simultaneous Solution of the RNA Folding, Alignment and Protosequence Problems
- Limit distributions of maximal segmental score among Markov-dependent partial sums
- A phase transition for the score in matching random sequences allowing deletions
- Rapid dynamic programming algorithms for RNA secondary structure
- RNA secondary structure: a complete mathematical analysis
- Algorithms for Loop Matchings
- Sequence comparison significance and Poisson approximation
- A Poisson approximation for sequence comparisons with insertions and deletions
- The Erdős-Rényi law in distribution, for coin tossing and sequence matching
- RNA secondary structures and their prediction
- A limit theorem for matching random sequences allowing deletions
- Maximal length of common words among random letter sequences
- Critical phenomena in sequence matching
- An Erdős-Rényi law with shifts
Cited In (6)
- Loop entropy assists tertiary order: loopy stabilization of stacking motifs
- Asymptotics for local maximal stack scores with general loop penalty function
- Arrhenius lifetimes of RNA structures from free energy landscapes
- Random words in free groups, non-crossing matchings and RNA secondary structures
- Barrier heights between ground states in a model of RNA secondary structure
- Information generation and the loss of conformational entropy during RNA folding
This page was built for publication: A phase transition for the minimum free energy of secondary structures of a random RNA
Report a bug (only for logged in users!)Click here to report a bug for this page (MaRDI item Q675899)
