ARVO: A Fortran package for computing the solvent accessible surface area and the excluded volume of overlapping spheres via analytic equations

DOI10.1016/J.CPC.2004.08.002zbMATH Open1196.92001DBLPjournals/cphysics/BusaDHHHPPSW05OpenAlexW1997638778WikidataQ29396390 ScholiaQ29396390MaRDI QIDQ709683FDOQ709683

Ming-Chya Wu, Edik Hayryan, Ján Buša, Chin-Kun Hu, Jaroslav Skřivánek, J. Džurina, Imrich Pokorný, Ján Plavka, Shura Hayryan

Publication date: 18 October 2010

Published in: Computer Physics Communications (Search for Journal in Brave)

Full work available at URL: https://doi.org/10.1016/j.cpc.2004.08.002

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zbMATH Keywords

stereographic projectionproteinsanalytical equationspercolation probability

Mathematics Subject Classification ID

Biochemistry, molecular biology (92C40) Interacting random processes; statistical mechanics type models; percolation theory (60K35) Software, source code, etc. for problems pertaining to biology (92-04) Computational methods for problems pertaining to biology (92-08) Biophysics (92C05)

Cites Work

• Title not available (Why is that?)
• Title not available (Why is that?)
• Title not available (Why is that?)
• [SMMP] A modern package for simulation of proteins
• Title not available (Why is that?)

Cited In (6)

• CAVE: A package for detection and quantitative analysis of internal cavities in a system of overlapping balls: Application to proteins
• An enhanced version of SMMP-open-source software package for simulation of proteins
• Mathematical analysis and calculation of molecular surfaces
• Computation of the effective volumes of covalently bonded molecules
• Excluded-volume potential for rigid molecules endowed with C_2v symmetry
• ARVO

Uses Software

• SMMP

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