ARVO: A Fortran package for computing the solvent accessible surface area and the excluded volume of overlapping spheres via analytic equations

DOI10.1016/J.CPC.2004.08.002MaRDI QIDQ709683zbMATH OpenOpenAlexDBLPWikidataFDO

Authors Ján Buša, Edik Hayryan, Shura Hayryan, Chin-Kun Hu, Ján Plavka, Imrich Pokorný, Jaroslav Skřivánek, Ming-Chya Wu, J. Džurina

Publication date 18 October 2010

Published in Computer Physics Communications (Search for Journal in Brave)

Full work available at URL https://doi.org/10.1016/j.cpc.2004.08.002

zbMATH Keywords

stereographic projectionproteinsanalytical equationspercolation probability

Mathematics Subject Classification ID

Biochemistry, molecular biology (92C40) Interacting random processes; statistical mechanics type models; percolation theory (60K35) Software, source code, etc. for problems pertaining to biology (92-04) Computational methods for problems pertaining to biology (92-08) Biophysics (92C05)

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Cites work

• scientific article; zbMATH DE number 3120653 (Why is no real title available?)
• scientific article; zbMATH DE number 49026 (Why is no real title available?)
• scientific article; zbMATH DE number 3511136 (Why is no real title available?)
• scientific article; zbMATH DE number 3198802 (Why is no real title available?)
• [SMMP] A modern package for simulation of proteins

Cited in

(7)

• Excluded-volume potential for rigid molecules endowed with \(C_{2v}\) symmetry
• CAVE: A package for detection and quantitative analysis of internal cavities in a system of overlapping balls: Application to proteins
• An enhanced version of SMMP-open-source software package for simulation of proteins
• Mathematical analysis and calculation of molecular surfaces
• Computation of the effective volumes of covalently bonded molecules
• CAVE-CL: an OpenCL version of the package for detection and quantitative analysis of internal cavities in a system of overlapping balls: application to proteins
• ARVO

Describes a project that uses

Uses Software

• SMMP

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