Differential geometry based multiscale models

From MaRDI portal
Publication:711499

DOI10.1007/s11538-010-9511-xzbMath1198.92001OpenAlexW2086200041WikidataQ42589738 ScholiaQ42589738MaRDI QIDQ711499

Guo-Wei Wei

Publication date: 26 October 2010

Published in: Bulletin of Mathematical Biology (Search for Journal in Brave)

Full work available at URL: https://doi.org/10.1007/s11538-010-9511-x




Related Items

A computational model of protein induced membrane morphology with geodesic curvature driven protein-membrane interfacePseudo-time-coupled nonlinear models for biomolecular surface representation and solvation analysisPartial differential equation transform-Variational formulation and Fourier analysisBiomolecular surface construction by PDE transformQuantum dynamics in continuum for proton transport II: Variational solvent-solute interfaceObject-oriented persistent homologyA topological approach for protein classificationGeometric and electrostatic modeling using molecular rigidity functionsA new Poisson-Nernst-Planck model with ion-water interactions for charge transport in ion channelsNumerical methods for the Poisson-Fermi equation in electrolytesMultiscale geometric modeling of macromolecules. I: Cartesian representationOperator splitting ADI schemes for pseudo-time coupled nonlinear solvation simulationsSecond order method for solving 3D elasticity equations with complex interfacesMinimization and Eulerian formulation of differential geometry based nonpolar multiscale solvation modelsDifferential geometry based solvation model. I: Eulerian formulationTowards the modeling of nanoindentation of virus shells: do substrate adhesion and geometry matter?A new approach to constrained total variation solvation models and the study of solute-solvent interface profilesMultiscale molecular dynamics using the matched interface and boundary methodExistence and local uniqueness of classical Poisson-Nernst-Planck systems with multi-component permanent charges and multiple cationsKernel free boundary integral method for 3D incompressible flow and linear elasticity equations on irregular domainsCalculation of electrostatic free energy for the nonlinear Poisson-Boltzmann model based on the dimensionless potentialFractional Poisson-Nernst-Planck model for ion channels. I: Basic formulations and algorithmsModeling and computation of heterogeneous implicit solvent and its applications for biomoleculesA numerical framework for two-dimensional large deformation of inhomogeneous swelling of gels using the improved complex variable element-free Galerkin methodA computational framework for transverse compression of microtubules based on a higher-order Cauchy-Born ruleDifferential geometry based solvation model II: Lagrangian formulationModeling and computation of heterogeneous implicit solvent and its applications for biomoleculesSecond-order Poisson-Nernst-Planck solver for ion transportSmall permanent charge effects on individual fluxes via Poisson-Nernst-Planck models with multiple cationsNonlinear simulation of an elastic tumor-host interfaceEvolutionary de Rham-Hodge methodA generalized finite difference method for solving elasticity interface problemsSpectral method and spectral element method for three dimensional linear elliptic system: analysis and applicationA multiscale framework for large deformation modeling of RBC membranesEffects on I–V relations from small permanent charge and channel geometry via classical Poisson–Nernst–Planck equations with multiple cationsA weak Galerkin method for elasticity interface problemsHigh-order fractional partial differential equation transform for molecular surface constructionFully implicit ADI schemes for solving the nonlinear Poisson-Boltzmann equationMatched interface and boundary method for elasticity interface problems



Cites Work