Error tolerant model for incorporating biological knowledge with expression data in estimating gene networks

DOI10.1016/J.STAMET.2005.09.013MaRDI QIDQ713670zbMATHOpenAlexWikidataFDO

Authors Seiya Imoto, Tomoyuki Higuchi, Takao Goto, Satoru Miyano

Publication date 19 October 2012

Published in Statistical Methodology (Search for Journal in Brave)

Full work available at URL https://doi.org/10.1016/j.stamet.2005.09.013

zbMATH Keywords

Bayesian networksmicroarray databiological knowledgeerror tolerant model

Mathematics Subject Classification ID

Applications of statistics to biology and medical sciences; meta analysis (62P10) Biochemistry, molecular biology (92C40) Genetics and epigenetics (92D10) Systems biology, networks (92C42)

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• scientific article; zbMATH DE number 1950574

Cites work

• scientific article; zbMATH DE number 1222293 (Why is no real title available?)
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• Bootstrap methods: another look at the jackknife
• Flexible smoothing with \(B\)-splines and penalties. With comments and a rejoinder by the authors
• Inferring gene regulatory networks from time-ordered gene expression data of bacillus subtilis using differential equations
• Modeling the complexity of genetic networks: Understanding multigenic and pleiotropic regulation.
• Selection of smoothing parameters in \(B\)-spline nonparametric regression models using information criteria

Cited in

(13)

• A statistical method for measuring activation of gene regulatory networks
• Information‐incorporated Gaussian graphical model for gene expression data
• Incorporating Biological Information as a Prior in an Empirical Bayes Approach to Analyzing Microarray Data
• New analysis methods for gene expression via construction and incorporation of biological networks.
• Coping with uncertainty in temporal gene expressions using symbolic representations
• A mathematical program to refine gene regulatory networks
• Computational Methods in Systems Biology
• Improving the structure MCMC sampler for Bayesian networks by introducing a new edge reversal move
• Sparse factor model for co-expression networks with an application using prior biological knowledge
• Dynamic Bayesian network approach for modeling gene regulatory networks
• A new mixed MNP model accommodating a variety of dependent non-normal coefficient distributions
• Growing enzyme gene networks by integration of gene expression, motif sequence, and metabo\-lic information
• Smoothing gene expression data with network information improves consistency of regulated genes

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