Modeling the complexity of genetic networks: Understanding multigenic and pleiotropic regulation.

DOI10.1002/CPLX.6130010612zbMATH Open1455.92053OpenAlexW2081999679MaRDI QIDQ960447FDOQ960447

Carol Ann Sniegoski, Roland Somogogyi

Publication date: 21 December 2008

Published in: Complexity (Search for Journal in Brave)

Full work available at URL: https://doi.org/10.1002/cplx.6130010612

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zbMATH Keywords

genetic networksgene expressionattractorsBoolean networksdevelopmentmolecular evolutionbiological rhythmsmolecular geneticsmolecular signaling

Mathematics Subject Classification ID

Biochemistry, molecular biology (92C40) Genetics and epigenetics (92D10)

Cited In (44)

• On Construction of Sparse Probabilistic Boolean Networks
• Statistical methods in experimentation recommendation models for discovering gene regulation pathways
• Structural properties of continuous representations of Boolean functions for gene network modelling
• Non-fragile synchronization of genetic regulatory networks with randomly occurring controller gain fluctuation
• Random Boolean networks response to external periodic signals
• STATE-SPACE MODEL WITH TIME DELAYS FOR GENE REGULATORY NETWORKS
• Encoding Boolean networks into reaction systems for investigating causal dependencies in gene regulation
• Robust stability for uncertain genetic regulatory networks with interval time-varying delays
• Genetic Regulatory Networks and Co-Regulation of Genes: A Dynamic Model Based Approach
• Bifurcation analysis and control of a class of hybrid biological economic models
• Modeling Parsimonious Putative Regulatory Networks: Complexity and Heuristic Approach
• Constraints-based models: regulation of gene expression reduces the steady-state solution space
• Time-delayed models of gene regulatory networks
• A singular bioeconomic model with diffusion and time delay
• From topology to dynamics in biochemical networks
• Regulatory network for cell shape changes during \textit{Drosophila} ventral furrow formation
• Stability and bifurcation of delayed bidirectional gene regulatory networks with negative feedback loops
• Delay-dependent stability criteria for genetic regulatory networks with time-varying delays and nonlinear disturbance
• Phase transition for the threshold contact process, an approximation of heterogeneous random Boolean networks
• Stability analysis for continuous-time and discrete-time genetic regulatory networks with delays
• Comparing different ODE modelling approaches for gene regulatory networks
• \(H_\infty\) filtering for discrete-time genetic regulatory networks with random delay described by a Markovian chain
• A simple greedy algorithm for finding functional relations: Efficient implementation and average case analysis
• Combinatorial explosion in model gene networks.
• TOOLS FOR NETWORK DYNAMICS
• State estimation for Markovian jumping genetic regulatory networks with random delays
• Exponential stability analysis for genetic regulatory networks with both time-varying and continuous distributed delays
• Stability of uncertain impulsive stochastic genetic regulatory networks with time-varying delay in the leakage term
• A survey of gene regulatory networks modelling methods: from differential equations, to Boolean and qualitative bioinspired models
• Variance-constrained filtering for discrete-time genetic regulatory networks with state delay and random measurement delay
• Robust filtering of uncertain stochastic genetic regulatory networks with time-varying delays
• Identification of genetic networks by strategic gene disruptions and gene overexpressions under a Boolean model.
• DELAY-INDEPENDENT STABILITY OF GENETIC REGULATORY NETWORKS WITH TIME DELAYS
• Modelling the evolution of genetic regulatory networks
• An Improved Algorithm for Detecting a Singleton Attractor in a Boolean Network Consisting of AND/OR Nodes
• Hopf bifurcation and stability for a differential-algebraic biological economic system
• Robust stability analysis of stochastic delayed genetic regulatory networks with polytopic uncertainties and linear fractional parametric uncertainties
• Modelling and analysis of gene regulatory network using feedback control theory
• The gene expression matrix: Towards the extraction of genetic network architectures
• Error tolerant model for incorporating biological knowledge with expression data in estimating gene networks
• Inferring models of gene expression dynamics
• Kalman filtering for genetic regulatory networks with missing values
• State estimation for delayed genetic regulatory networks based on passivity theory
• Bifurcation and chaotic behavior of a discrete singular biological economic system

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