Finite element modeling of lipid bilayer membranes

DOI10.1016/J.JCP.2006.05.023MaRDI QIDQ860313zbMATH OpenOpenAlexFDO

Authors Feng Feng, William S. Klug

Publication date 9 January 2007

Published in Journal of Computational Physics (Search for Journal in Brave)

Full work available at URL https://doi.org/10.1016/j.jcp.2006.05.023

zbMATH Keywords

biomembranesfinite elementscell mechanicssubdivision surfaceslipid bilayer mechanics

Mathematics Subject Classification ID

Probabilistic models, generic numerical methods in probability and statistics (65C20) Biophysics (92C05) Cell biology (92C37)

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Cites work

• scientific article; zbMATH DE number 3511136 (Why is no real title available?)
• scientific article; zbMATH DE number 3438337 (Why is no real title available?)
• scientific article; zbMATH DE number 1487469 (Why is no real title available?)
• scientific article; zbMATH DE number 3196723 (Why is no real title available?)
• A phase field approach in the numerical study of the elastic bending energy for vesicle membranes
• An approach to nonlinear programming
• Deformations of the geometry of lipid vesicles
• Finite element method. Vol. 1: The basis.
• Fully \(C^1\)-conforming subdivision elements for finite deformation thin-shell analysis
• Minimizing the Squared Mean Curvature Integral for Surfaces in Space Forms
• Numerical Optimization
• Simulating the deformation of vesicle membranes under elastic bending energy in three dimensions
• Static equilibrium configurations of a model red blood cell
• The Equations of Mechanical Equilibrium of a Model Membrane
• The Surface Evolver

Cited in

(49)

• Numerical methods for biomembranes: conforming subdivision methods versus non-conforming PL methods
• A nonlinear elasticity model of macromolecular conformational change induced by electrostatic forces
• Symmetry-breaking global bifurcation in a surface continuum phase-field model for lipid bilayer vesicles
• Relaxation dynamics of capillary folding of thin elastic sheets with pinned contact lines
• Simulating capillary folding of thin elastic sheets with pinned contact lines
• Subdivision shell elements with anisotropic growth
• A semi-implicit finite element method for viscous lipid membranes
• On the equivalence of local and global area-constraint formulations for lipid bilayer vesicles
• Modelling and simulations of multi-component lipid membranes and open membranes via diffuse interface approaches
• The Lipid Bilayer at the Mesoscale: A Physical Continuum Model
• Modeling and computation of two phase geometric biomembranes using surface finite elements
• A gauge-fixing procedure for spherical fluid membranes and application to computations
• Direct computation of two-phase icosahedral equilibria of lipid bilayer vesicles
• A \(C^1\) finite element method for axisymmetric lipid membranes in the presence of the Gaussian energy
• Biomembrane modeling with isogeometric analysis
• Computing the volume enclosed by a periodic surface and its variation to model a follower pressure
• Diffusion-redistanciation schemes for 2D and 3D constrained Willmore flow: application to the equilibrium shapes of vesicles
• Numerical modelling of a spheroid living cell membrane under hydrostatic pressure
• Arbitrary Lagrangian-Eulerian finite element method for curved and deforming surfaces. I: General theory and application to fluid interfaces
• A level set projection model of lipid vesicles in general flows
• Osmotically driven beading instability in axons: continuum theory, perturbation analysis and finite element implementation
• A phase field model for vesicle-substrate adhesion
• Hydrodynamics simulation of red blood cells: Employing a penalty method with double jump composition of lower order time integrator
• Analytical solution of lipid membrane morphology subjected to boundary forces on the edges of rectangular membranes
• Modeling the electrostatic contribution to the line tension between lipid membrane domains using Poisson-Boltzmann theory
• Model studies of lipid flip-flop in membranes
• Computational modeling of coupled interactions of fluid membranes with embedded filaments
• Curvature-induced spatial ordering of composition in lipid membranes
• A finite element method to compute three-dimensional equilibrium configurations of fluid membranes: optimal parameterization, variational formulation and applications
• Modelling fluid deformable surfaces with an emphasis on biological interfaces
• A finite element method for viscous membranes
• A fast algorithm for simulating vesicle flows in three dimensions
• An adaptive meshfree method for phase-field models of biomembranes. I: Approximation with maximum-entropy basis functions
• Isogeometric FEM-BEM simulations of drop, capsule and vesicle dynamics in Stokes flow
• A stabilized finite element formulation for liquid shells and its application to lipid bilayers
• A numerical method for simulating the dynamics of 3D axisymmetric vesicles suspended in viscous flows
• Imposing Dirichlet boundary conditions with Nitsche's method and spline-based finite elements
• Parametric FEM for geometric biomembranes
• Subdivision shells with exact boundary control and non-manifold geometry
• Fully implicit methodology for the dynamics of biomembranes and capillary interfaces by combining the level set and Newton methods
• Viscous regularization and r-adaptive remeshing for finite element analysis of lipid membrane mechanics
• A boundary integral method for simulating the dynamics of inextensible vesicles suspended in a viscous fluid in 2D
• A flexible \(C^2\) subdivision scheme on the sphere: with application to biomembrane modelling
• The flatness of lamellipodia explained by the interaction between actin dynamics and membrane deformation
• Second-order convex maximum entropy approximants with applications to high-order PDE
• A mixed immersed finite element method for fourth-order interface problems on surfaces
• B-spline based finite-element method for the stationary quasi-geostrophic equations of the Ocean
• A phase field method for simulating morphological evolution of vesicles in electric fields
• An application of cellular automata to model a lipid membrane

Describes a project that uses

Uses Software

• Surface Evolver

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