Sampling conformation space to model equilibrium fluctuations in proteins

DOI10.1007/S00453-007-0178-0MaRDI QIDQ995778zbMATH OpenOpenAlexDBLPWikidataFDO

Authors Amarda Shehu, Cecilia Clementi, Lydia E. Kavraki

Publication date 10 September 2007

Published in Algorithmica (Search for Journal in Brave)

Full work available at URL https://doi.org/10.1007/s00453-007-0178-0

Mathematics Subject Classification ID

Biochemistry, molecular biology (92C40) Applications of statistical mechanics to specific types of physical systems (82D99)

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Cited in

(8)

• Modeling structures and motions of loops in protein molecules
• scientific article; zbMATH DE number 5504052 (Why is no real title available?)
• A two-fold structural classification method for determining the accurate ensemble of protein structures
• Protein structural ensembles reflecting internal dynamics: generation, evaluation and biomedical relevance
• scientific article; zbMATH DE number 1981809 (Why is no real title available?)
• Coarse grained normal mode analysis vs. refined Gaussian network model for protein residue-level structural fluctuations
• Constructing the equilibrium ensemble of folding pathways from short off-equilibrium simulations
• Finding protein thermostability and spin-coupling constant using Bayesian statistics

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Uses Software

• OPT++

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