Side Chain-Positioning as an Integer Programming Problem

DOI10.1007/3-540-44696-6_10MaRDI QIDQ4801146zbMATH OpenOpenAlexFDO

Authors Olivia Eriksson, Yishao Zhou, Arne Elofsson

Publication date 6 April 2003

Published in Lecture Notes in Computer Science (Search for Journal in Brave)

Full work available at URL https://doi.org/10.1007/3-540-44696-6_10

Mathematics Subject Classification ID

Protein sequences, DNA sequences (92D20) Integer programming (90C10)

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(11)

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• Integer Linear Programming in Computational Biology
• Efficient use of semidefinite programming for selection of rotamers in protein conformations
• An improved hybrid global optimization method for protein tertiary structure prediction
• Some operations research methods for analyzing protein sequences and structures
• A semidefinite programming approach to side chain positioning with new rounding strategies
• Fast and accurate algorithms for protein side-chain packing
• Protein structure optimization by side-chain positioning via beta-complex
• scientific article; zbMATH DE number 2084725 (Why is no real title available?)
• BetaSCP2: a program for the optimal prediction of side-chains in proteins
• Mathematical programming in computational biology: an annotated bibliography

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