Simple and Fast Inverse Alignment

DOI10.1007/11732990_37MaRDI QIDQ3596333zbMATH OpenOpenAlexFDO

Authors Eagu Kim, John D. Kececioglu

Publication date 30 August 2007

Published in Lecture Notes in Computer Science (Search for Journal in Brave)

Full work available at URL https://doi.org/10.1007/11732990_37

zbMATH Keywords

supervised learninglinear programmingsequence analysiscutting plane algorithmsaffine gap penaltiesparametric sequence alignmentsubstitution score matrices

Mathematics Subject Classification ID

Biochemistry, molecular biology (92C40)

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Cited in

(5)

• Inverse parametric sequence alignment
• CONTRAlign: Discriminative Training for Protein Sequence Alignment
• Integer Linear Programming in Computational Biology
• Computing posterior probabilities for score-based alignments using ppALIGN
• Mathematical programming in computational biology: an annotated bibliography

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