GSA

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Gene Set Analysis

Brad Efron

Last update: 19 March 2022

Copyright license: GNU Library General Public License, version 2.0, GNU Lesser General Public License, version 2.1, GNU Lesser General Public License, version 3.0

Software version identifier: 1.03.2

Source code repository: https://github.com/cran/GSA

Cited In (35)

• Shrinkage-based diagonal Hotelling's tests for high-dimensional small sample size data
• Identification of differentially expressed spatial clusters using humoral response microarray data
• Partition clustering of high dimensional low sample size data based on \(p\)-values
• Microarrays, empirical Bayes and the two-groups model
• On testing the significance of sets of genes
• A high-dimensional two-sample test for the mean using random subspaces
• Probabilistic methods in cancer biology
• Combined Hypothesis Testing on Graphs With Applications to Gene Set Enrichment Analysis
• Penalized model-based clustering
• Simultaneous inference: when should hypothesis testing problems be combined?
• Incorporation of gene exchangeabilities improves the reproducibility of gene set rankings
• Additive varying-coefficient model for nonlinear gene-environment interactions
• Permutation test for incomplete paired data with application to cDNA microarray data
• Hunting for significance: Bayesian classifiers under a mixture loss function
• A two-sample test for high-dimensional data with applications to gene-set testing
• A Bayesian model averaging approach for observational gene expression studies
• Test for high dimensional regression coefficients of partially linear models
• Identification of consistent functional genetic modules
• A new test for part of high dimensional regression coefficients
• A feasible high dimensional randomization test for the mean vector
• Deriving and comparing the distribution for the number of false positives in single step methods to control \(k\)-FWER
• Graph Centrality Based Prediction of Cancer Genes
• samr
• Distance-correlation based gene set analysis in longitudinal studies
• Joint adaptive mean-variance regularization and variance stabilization of high dimensional data
• Conditional mean and quantile dependence testing in high dimension
• Rank-based score tests for high-dimensional regression coefficients
• TcGSA
• A new nonparametric test for high-dimensional regression coefficients
• Distribution-free tests of mean vectors and covariance matrices for multivariate paired data
• Bayesian nonparametric clustering and association studies for candidate SNP observations
• Stable feature selection for biomarker discovery
• A statistical framework for testing functional categories in microarray data
• Consistency of invariance-based randomization tests
• Robust \(U\)-type test for high dimensional regression coefficients using refitted cross-validation variance estimation

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