swMATH33845MaRDI QIDQ45554FDOQ45554
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Official website: https://www.hsph.harvard.edu/alkes-price/software/
Source code repository: https://github.com/DReichLab/EIG/tree/master/EIGENSTRAT
Cited In (only showing first 100 items - show all)
- Augmentation schemes for particle MCMC
- Leveraging local identity-by-descent increases the power of case/control GWAS with related individuals
- lfmm
- Certifiably optimal sparse principal component analysis
- Asymptotic powers for matched trend tests and robust matched trend tests in case-control genetic association studies
- Bayes factors in the presence of population stratification
- Powerful test based on conditional effects for genome-wide screening
- A knockoff filter for high-dimensional selective inference
- Population structure and cryptic relatedness in genetic association studies
- Effective sample size: quick estimation of the effect of related samples in genetic case-control association analyses
- Sparse latent factor regression models for genome-wide and epigenome-wide association studies
- \(p\)-value calibration for multiple testing problems in genomics
- Separating populations with wide data: a spectral analysis
- Identifying QTLs and epistasis in structured plant populations using adaptive mixed LASSO
- Imputation and low-rank estimation with missing not at random data
- PLINK
- GenAlEx
- CLUMPP
- SDMTools
- ProbABEL
- FAMT
- leapp
- aplpack
- pedigreem
- ADMIXMAP
- PSMIX
- rrBLUP
- STRUCTURE
- IMPUTE
- GWAsimulator
- genMOSS
- MaCH
- pi-MASS
- HAPGEN2
- denoiseR
- qvalue
- Asymptotic properties of principal component analysis and shrinkage-bias adjustment under the generalized spiked population model
- Bayesian variable selection regression for genome-wide association studies and other large-scale problems
- Toward the human genotope
- A Bayesian graphical model for genome-wide association studies (GWAS)
- PennCNV
- EigenPrism
- FFBSKAT
- GCTA
- RelateAdmix
- GEMMA
- FTEC
- Rassoc
- hapassoc
- admixture
- LAMP
- ePCA
- METAL
- BUScorrect
- MPAT
- FMS
- MaXact
- DREBIN
- ANCESTRYMAP
- Frappe
- GemTools
- HapMix
- SABER
- PySyft
- selective-inference
- ccSVM
- Qxpak
- pedigreemm
- PedGenie
- ruv
- HDTD
- GeoPCA
- sphunif
- Combining dependent \(F\)-tests for robust association of quantitative traits under genetic model uncertainty
- ROP: matrix recovery via rank-one projections
- Descartes' rule of signs and the identifiability of population demographic models from genomic variation data
- Robust methods to detect disease-genotype association in genetic association studies: calculate \(p\)-values using exact conditional enumeration instead of simulated permutations or asymptotic approximations
- Variable selection for mixed data clustering: application in human population genomics
- Testing significance of features by lassoed principal components
- Robust computation of linear models by convex relaxation
- Eigenanalysis of SNP data with an identity by descent interpretation
- GWAS Catalog
- Accurate and Efficient P-value Calculation Via Gaussian Approximation: A Novel Monte-Carlo Method
- ScreeNOT
- DDL
- Multiple hypothesis testing adjusted for latent variables, with an application to the AGEMAP gene expression data
- Convergence and prediction of principal component scores in high-dimensional settings
- ThreSPCA
- The use of plasmodes as a supplement to simulations: a simple example evaluating individual admixture estimation methodologies
- A practical approach to adjusting for population stratification in genome-wide association studies: principal components and propensity scores (PCAPS)
- An impossibility result for phylogeny reconstruction from \(k\)-mer counts
- Simple and reliable estimators of coefficients of interest in a model with high-dimensional confounding effects
- A spectral graph approach to discovering genetic ancestry
- Nonparametric variable selection and classification: the CATCH algorithm
- How genes modulate patterns of aging-related changes on the way to 100: biodemographic models and methods in genetic analyses of longitudinal data
- Flexible modelling of genetic effects on function-valued traits
- The blessings of multiple causes
- Dual principal component pursuit
- Comment on “Blessings of Multiple Causes”
- Principal components adjusted variable screening
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