Eigenstrat

swMATH33845MaRDI QIDQ45554FDOQ45554

Author name not available (Why is that?)

Source code repository: https://github.com/DReichLab/EIG/tree/master/EIGENSTRAT

Cited In (60)

• Augmentation schemes for particle MCMC
• Leveraging local identity-by-descent increases the power of case/control GWAS with related individuals
• The use of plasmodes as a supplement to simulations: a simple example evaluating individual admixture estimation methodologies
• Certifiably optimal sparse principal component analysis
• A practical approach to adjusting for population stratification in genome-wide association studies: principal components and propensity scores (PCAPS)
• An impossibility result for phylogeny reconstruction from \(k\)-mer counts
• Asymptotic powers for matched trend tests and robust matched trend tests in case-control genetic association studies
• Bayes factors in the presence of population stratification
• Simple and reliable estimators of coefficients of interest in a model with high-dimensional confounding effects
• Powerful test based on conditional effects for genome-wide screening
• A spectral graph approach to discovering genetic ancestry
• A knockoff filter for high-dimensional selective inference
• Nonparametric variable selection and classification: the CATCH algorithm
• Population structure and cryptic relatedness in genetic association studies
• Effective sample size: quick estimation of the effect of related samples in genetic case-control association analyses
• Sparse latent factor regression models for genome-wide and epigenome-wide association studies
• \(p\)-value calibration for multiple testing problems in genomics
• Separating populations with wide data: a spectral analysis
• The blessings of multiple causes
• Dual principal component pursuit
• Comment on “Blessings of Multiple Causes”
• Identifying QTLs and epistasis in structured plant populations using adaptive mixed LASSO
• Imputation and low-rank estimation with missing not at random data
• Principal components adjusted variable screening
• Nonsparse learning with latent variables
• Asymptotic properties of principal component analysis and shrinkage-bias adjustment under the generalized spiked population model
• Analysis of genetic association studies incorporating prior information of genetic models
• Bayesian variable selection regression for genome-wide association studies and other large-scale problems
• Toward the human genotope
• Robust PCA by manifold optimization
• Recursive transformed component statistical analysis for incipient fault detection
• A Bayesian graphical model for genome-wide association studies (GWAS)
• Unifying and generalizing methods for removing unwanted variation based on negative controls
• A fast, provably accurate approximation algorithm for sparse principal component analysis reveals human genetic variation across the world
• Combining dependent \(F\)-tests for robust association of quantitative traits under genetic model uncertainty
• ROP: matrix recovery via rank-one projections
• Descartes' rule of signs and the identifiability of population demographic models from genomic variation data
• Robust methods to detect disease-genotype association in genetic association studies: calculate \(p\)-values using exact conditional enumeration instead of simulated permutations or asymptotic approximations
• Reliable clustering of Bernoulli mixture models
• Variable selection for mixed data clustering: application in human population genomics
• A comparison of principal component methods between multiple phenotype regression and multiple SNP regression in genetic association studies
• Testing significance of features by lassoed principal components
• A statistical test for detecting parent-of-origin effects when parental information is missing
• Comparing the performance of linear and nonlinear principal components in the context of high-dimensional genomic data integration
• Robust computation of linear models by convex relaxation
• Eigenanalysis of SNP data with an identity by descent interpretation
• Sparse probit linear mixed model
• Penalized partial least square applied to structured data
• The principal problem with principal components regression
• Accurate and Efficient P-value Calculation Via Gaussian Approximation: A Novel Monte-Carlo Method
• Adjusting for spatial effects in genomic prediction
• Multiple hypothesis testing adjusted for latent variables, with an application to the AGEMAP gene expression data
• Convergence and prediction of principal component scores in high-dimensional settings
• Doubly debiased Lasso: high-dimensional inference under hidden confounding
• How genes modulate patterns of aging-related changes on the way to 100: biodemographic models and methods in genetic analyses of longitudinal data
• Flexible modelling of genetic effects on function-valued traits
• Genetic variant set-based tests using the generalized Berk-Jones statistic with application to a genome-wide association study of breast cancer
• A Modified Random Survival Forests Algorithm for High Dimensional Predictors and Self-Reported Outcomes
• Gene-based association testing of dichotomous traits with generalized functional linear mixed models using extended pedigrees: applications to age-related macular degeneration
• Diagonally Dominant Principal Component Analysis

This page was built for software: Eigenstrat