Understanding long-range correlations in DNA sequences
From MaRDI portal
Abstract: In this paper, we review the literature on statistical long-range correlation in DNA sequences. We examine the current evidence for these correlations, and conclude that a mixture of many length scales (including some relatively long ones) in DNA sequences is responsible for the observed 1/f-like spectral component. We note the complexity of the correlation structure in DNA sequences. The observed complexity often makes it hard, or impossible, to decompose the sequence into a few statistically stationary regions. We suggest that, based on the complexity of DNA sequences, a fruitful approach to understand long-range correlation is to model duplication, and other rearrangement processes, in DNA sequences. One model, called ``expansion-modification system", contains only point duplication and point mutation. Though simplistic, this model is able to generate sequences with 1/f spectra. We emphasize the importance of DNA duplication in its contribution to the observed long-range correlation in DNA sequences.
Recommendations
Cites work
- scientific article; zbMATH DE number 3887502 (Why is no real title available?)
- scientific article; zbMATH DE number 3984294 (Why is no real title available?)
- scientific article; zbMATH DE number 3986649 (Why is no real title available?)
- scientific article; zbMATH DE number 4062892 (Why is no real title available?)
- scientific article; zbMATH DE number 48502 (Why is no real title available?)
- scientific article; zbMATH DE number 236854 (Why is no real title available?)
- scientific article; zbMATH DE number 3208729 (Why is no real title available?)
- scientific article; zbMATH DE number 3062467 (Why is no real title available?)
- Convergence analysis and error estimate of finite element method of a nonlinear fluid-structure interaction problem
- Extracting cellular automaton rules directly from experimental data
- GENERATING NONTRIVIAL LONG-RANGE CORRELATIONS AND 1/f SPECTRA BY REPLICATION AND MUTATION
- Mutual information functions versus correlation functions.
- Soliton turbulence in one-dimensional cellular automata
- Spectral Analysis for Physical Applications
- Transition phenomena in cellular automata rule space
Cited in
(24)- A new method to study genome mutations using the information entropy
- Entropic fluctuations in DNA sequences
- Distance, correlation and mutual information among portraits of organisms based on complete genomes
- Multiscaling in expansion-modification systems: an explanation for long range correlation in DNA
- Multifractal analysis of DNA sequences using a novel chaos-game representation
- Long-range correlations in DNA sequences using 2D DNA walk based on pairs of sequential nucleotides
- Universality of long-range correlations in expansion-randomization systems
- Degeneracy and long-range correlations
- Measuring complexity, nonextensivity and chaos in the DNA sequence of the major histocompatibility complex
- Long range clustering of oligonucleotides containing the CG signal
- A dynamical approach to DNA sequences.
- A fractal method to distinguish coding and non-coding sequences in a complete genome based on a number sequence representation
- scientific article; zbMATH DE number 806778 (Why is no real title available?)
- Unbiased diffusion of Brownian particles on disordered correlated potentials
- The role played by exons in genomic DNA sequence correlations
- Symbolic strings and spatial \(1/f\) spectra
- Multiscaling in expansion-modification systems.
- Multifractal characterisation of length sequences of coding and noncoding segments in a complete genome
- Wavelet-based method to disentangle transcription- and replication-associated strand asymmetries in mammalian genomes
- Lévy statistics in coding and non-coding nucleotide sequences
- Comparative statistical analysis of bacteria genomes in ``word context
- Use of Mutual Information Function and Power Spectra for Analyzing the Structure of Some Prokaryotic Genomes
- Long- and short-range correlations in genome organization
- Alignment Statistics for Long-Range Correlated Genomic Sequences
This page was built for publication: Understanding long-range correlations in DNA sequences
Report a bug (only for logged in users!)Click here to report a bug for this page (MaRDI item Q1817056)
