Graphical reduction of reaction networks by linear elimination of species

DOI10.1007/s00285-016-1028-yzbMath1357.92034arXiv1509.03153OpenAlexW2963773794WikidataQ46543011 ScholiaQ46543011MaRDI QIDQ504070

Meritxell Sáez, Carsten Wiuf, Elisenda Feliu

Publication date: 25 January 2017

Published in: Journal of Mathematical Biology (Search for Journal in Brave)

Full work available at URL: https://arxiv.org/abs/1509.03153

zbMATH Keywords

positivitydynamical systemnoninteractingquasi-steady-statereduced networkspecies graph

Mathematics Subject Classification ID

Kinetics in biochemical problems (pharmacokinetics, enzyme kinetics, etc.) (92C45) Chemical kinetics in thermodynamics and heat transfer (80A30)

Related Items (11)

Fast reactions with non-interacting species in stochastic reaction networks ⋮ Quasi-Steady-State and Singular Perturbation Reduction for Reaction Networks with Noninteracting Species ⋮ Intermediates and generic convergence to equilibria ⋮ Joining and decomposing reaction networks ⋮ A unified framework for limit results in chemical reaction networks on multiple time-scales ⋮ A proof of unlimited multistability for phosphorylation cycles ⋮ Algebra and Geometry in the Study of Enzymatic Cascades ⋮ Graphical criteria for positive solutions to linear systems ⋮ The multistationarity structure of networks with intermediates and a binomial core network ⋮ Singular perturbations and scaling ⋮ Nonnegative Linear Elimination for Chemical Reaction Networks

Uses Software

• parest_dae

Cites Work

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• Reaction network realizations of rational biochemical systems and their structural properties
• On the origin of Turing instability
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• Atoms of multistationarity in chemical reaction networks
• Variable elimination in post-translational modification reaction networks with mass-action kinetics
• Variable Elimination in Chemical Reaction Networks with Mass-Action Kinetics
• Quasi-Steady State – Intuition, Perturbation Theory and Algorithmic Algebra
• The QSSA in Chemical Kinetics: As Taught and as Practiced

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