Joining and decomposing reaction networks

DOI10.1007/s00285-020-01477-yzbMath1439.13080arXiv1810.05575OpenAlexW3009119295WikidataQ89985967 ScholiaQ89985967MaRDI QIDQ2182291

Heather A. Harrington, Anne Shiu, Elizabeth Gross, Nicolette Meshkat

Publication date: 23 May 2020

Published in: Journal of Mathematical Biology (Search for Journal in Brave)

Full work available at URL: https://arxiv.org/abs/1810.05575

zbMATH Keywords

Gröbner basisidentifiabilitymass-action kineticsreaction networkmultistationaritysteady-state invariant

Mathematics Subject Classification ID

Classical flows, reactions, etc. in chemistry (92E20) Real algebraic sets (14P05) Gröbner bases; other bases for ideals and modules (e.g., Janet and border bases) (13P10) Cell biology (92C37) Qualitative investigation and simulation of ordinary differential equation models (34C60) Differential algebra (12H05) Applications of commutative algebra (e.g., to statistics, control theory, optimization, etc.) (13P25)

Related Items (14)

The steady-state degree and mixed volume of a chemical reaction network ⋮ Positive equilibria of Hill-type kinetic systems ⋮ Absolutely Complex Balanced Kinetic Systems ⋮ Complex Balanced Equilibria of Weakly Reversible Poly-Pl Systems: Existence, Stability, and Robustness ⋮ Common complexes of decompositions and complex balanced equilibria of chemical reaction networks ⋮ Independent, Incidence Independent and Weakly Reversible Decompositions of Chemical Reaction Networks ⋮ Weakly reversible CF-decompositions of chemical kinetic systems ⋮ Splitting Reactions Preserves Nondegenerate Behaviors in Chemical Reaction Networks ⋮ Graphical characterizations of robust stability in biological interaction networks ⋮ Identifiability of linear compartmental tree models and a general formula for input-output equations ⋮ Families of toric chemical reaction networks ⋮ Independent decompositions of chemical reaction networks ⋮ Stationary distributions via decomposition of stochastic reaction networks ⋮ Oscillations and bistability in a model of ERK regulation

Uses Software

• DAISY
• parest_dae
• MESSI
• SIAN

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