Convergence of stochastic gene networks to hybrid piecewise deterministic processes

DOI10.1214/11-AAP814zbMath1261.60073arXiv1101.1431WikidataQ98839735 ScholiaQ98839735MaRDI QIDQ691103

M. C. Fu

Publication date: 29 November 2012

Published in: The Annals of Applied Probability (Search for Journal in Brave)

Full work available at URL: https://arxiv.org/abs/1101.1431

zbMATH Keywords

limit theorempiecewise deterministic Markov processstochastic gene networksmartingale representation of Markov process

Mathematics Subject Classification ID

Continuous-time Markov processes on general state spaces (60J25) Biochemistry, molecular biology (92C40)

Related Items (44)

Exact and WKB-approximate distributions in a gene expression model with feedback in burst frequency, burst size, and protein stability ⋮ Regularity and stability for the semigroup of jump diffusions with state-dependent intensity ⋮ A piecewise deterministic limit for a multiscale stochastic spatial gene network ⋮ Averaging for a Fully Coupled Piecewise-Deterministic Markov Process in Infinite Dimensions ⋮ On a stochastic gene expression with pre-mRNA, mRNA and protein contribution ⋮ Controllability Metrics on Networks with Linear Decision Process--type Interactions and Multiplicative Noise ⋮ Exact simulation of the jump times of a class of piecewise deterministic Markov processes ⋮ Optimal control of infinite-dimensional piecewise deterministic Markov processes and application to the control of neuronal dynamics via optogenetics ⋮ Algebraic invariance conditions in the study of approximate (null-)controllability of Markov switch processes ⋮ A stochastic hierarchical model for low grade glioma evolution ⋮ Return-to-normality in a piecewise deterministic Markov SIR+V model with pharmaceutical and non-pharmaceutical interventions ⋮ Simulation techniques for the calculus of wrapped compartments ⋮ Ergodicity and stability of hybrid systems with piecewise constant type state-dependent switching ⋮ A spatial measure-valued model for chemical reaction networks in heterogeneous systems ⋮ Separation of time-scales and model reduction for stochastic reaction networks ⋮ Probabilistic and Piecewise Deterministic models in Biology ⋮ Fluctuating-rate model with multiple gene states ⋮ Approximation and inference methods for stochastic biochemical kinetics—a tutorial review ⋮ Convergence to equilibrium for time-inhomogeneous jump diffusions with state-dependent jump intensity ⋮ Adiabatic reduction of a model of stochastic gene expression with jump Markov process ⋮ Stochastic hybrid automata with delayed transitions to model biochemical systems with delays ⋮ Ergodicity of one-dimensional regime-switching diffusion processes ⋮ Push-forward method for piecewise deterministic biochemical simulations ⋮ Non-parametric estimation of the spiking rate in systems of interacting neurons ⋮ Infection time in multistable gene networks. A backward stochastic variational inequality with nonconvex switch-dependent reflection approach ⋮ Modified log-Sobolev inequality for a compact pure jump Markov process with degenerate jumps ⋮ A piecewise deterministic Markov toy model for traffic/maintenance and associated Hamilton-Jacobi integrodifferential systems on networks ⋮ Convergence of stochastic gene networks to hybrid piecewise deterministic processes ⋮ Gene expression noise is affected differentially by feedback in burst frequency and burst size ⋮ Influence of gene copy number on self-regulated gene expression ⋮ Some simple but challenging Markov processes ⋮ Ergodicity of regime-switching diffusions in Wasserstein distances ⋮ Border Avoidance: Necessary Regularity for Coefficients and Viscosity Approach ⋮ Stability in Distribution of Path-Dependent Hybrid Diffusion ⋮ Exponential ergodicity in the bounded-Lipschitz distance for some piecewise-deterministic Markov processes with random switching between flows ⋮ Mean-Field Limits Beyond Ordinary Differential Equations ⋮ Asymptotic Control for a Class of Piecewise Deterministic Markov Processes Associated to Temperate Viruses ⋮ On subgeometric ergodicity of regime-switching diffusion processes ⋮ Optimal Singular Control Problem in Infinite Horizon for Stochastic Processes with Regime-Switching ⋮ Total variation distance between a jump-equation and its Gaussian approximation ⋮ Heavy-tailed distributions in a stochastic gene autoregulation model ⋮ Exponential ergodicity for Markov processes with random switching ⋮ Protein synthesis driven by dynamical stochastic transcription ⋮ Hybrid behaviour of Markov population models

Cites Work

• Convergence of stochastic gene networks to hybrid piecewise deterministic processes
• Asymptotic analysis of multiscale approximations to reaction networks
• Strong approximation theorems for density dependent Markov chains
• Wave propagation and time reversal in randomly layered media.
• Stochastic simulations of the origins and implications of long-tailed distributions in gene expression
• ON/OFF STORAGE SYSTEMS WITH STATE-DEPENDENT INPUT, OUTPUT, AND SWITCHING RATES
• Limit theorems for sequences of jump Markov processes approximating ordinary differential processes
• Adaptive simulation of hybrid stochastic and deterministic models for biochemical systems
• The Galilean nature of \(V\)-duality for noncommutative open string and Yang-Mills theories
• Unnamed Item
• Unnamed Item
• Unnamed Item
• Unnamed Item
• Unnamed Item
• Unnamed Item
• Unnamed Item
• Unnamed Item
• Unnamed Item
• Unnamed Item

This page was built for publication: Convergence of stochastic gene networks to hybrid piecewise deterministic processes