A poroelastic immersed boundary method with applications to cell biology

DOI10.1016/j.jcp.2014.10.004zbMath1351.76185OpenAlexW2001060991MaRDI QIDQ728858

Owen L. Lewis, Robert D. Guy, Calina A. Copos, Wanda Strychalski

Publication date: 20 December 2016

Published in: Journal of Computational Physics (Search for Journal in Brave)

Full work available at URL: https://doi.org/10.1016/j.jcp.2014.10.004

zbMATH Keywords

Stokes flowfluid-structure interactionhyperelasticitycell crawlingblebbing

Mathematics Subject Classification ID

Finite difference methods applied to problems in fluid mechanics (76M20) Finite difference methods for initial value and initial-boundary value problems involving PDEs (65M06) Cell biology (92C37) Physiological flows (76Z05)

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Uses Software

• DistMesh

Cites Work

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• A continuum model of motility in ameboid cells
• The influence of hindered transport on the development of platelet thrombi under flow
• An immersed boundary energy-based method for incompressible viscoelasticity
• A fast, robust, and non-stiff immersed boundary method
• Efficient solutions to robust, semi-implicit discretizations of the immersed boundary method
• Biomechanics of the brain: a theoretical and numerical study of Biot's equations of consolidation theory with deformation-dependent permeability
• Unconditionally stable discretizations of the immersed boundary equations
• An efficient semi-implicit immersed boundary method for the Navier-Stokes equations
• Implicit second-order immersed boundary methods with boundary mass
• On the hyperelastic formulation of the immersed boundary method
• A comparison of implicit solvers for the immersed boundary equations
• A computational model of aquatic animal locomotion
• Numerical analysis of blood flow in the heart
• Cytoplasm dynamics and cell motion: Two-phase flow models
• Immersed finite element method and its applications to biological systems
• A computational model of bleb formation
• A MLS-BASED LATTICE SPRING MODEL FOR SIMULATING ELASTICITY OF MATERIALS
• The immersed boundary method
• Microstructural Randomness Versus Representative Volume Element in Thermomechanics
• Rheology of the Cytoskeleton
• A Multigrid Method for a Model of the Implicit Immersed Boundary Equations
• A Simple Mesh Generator in MATLAB
• 2–D Parachute Simulation by the Immersed Boundary Method