The diversity of a distributed genome in bacterial populations

DOI10.1214/09-AAP657zbMath1196.92029arXiv0907.2572MaRDI QIDQ1958491

W. R. Hess, Peter Pfaffelhuber, Franz Baumdicker

Publication date: 4 October 2010

Published in: The Annals of Applied Probability (Search for Journal in Brave)

Full work available at URL: https://arxiv.org/abs/0907.2572

zbMATH Keywords

infinitely many sites model; Kingman's coalescent; gene content; infinitely many genes model

Mathematics Subject Classification ID

92D15: Problems related to evolution

60K35: Interacting random processes; statistical mechanics type models; percolation theory

60J20: Applications of Markov chains and discrete-time Markov processes on general state spaces (social mobility, learning theory, industrial processes, etc.)

92D10: Genetics and epigenetics

60J70: Applications of Brownian motions and diffusion theory (population genetics, absorption problems, etc.)

Related Items

Mean field dynamics of interaction processes with duplication, loss and copy, The site frequency spectrum of dispensable genes, The independent loss model with ordered insertions for the evolution of CRISPR spacers, Strong seed-bank effects in bacterial evolution

Uses Software

• GeneTRACE

Cites Work

• A coalescent process with simultaneous multiple mergers for approximating the gene genealogies of many marine organisms
• Non-equilibrium theory of the allele frequency spectrum
• Degenerate diffusions arising from gene duplication models
• The coalescent
• Mathematical population genetics. I: Theoretical introduction.
• A classification of coalescent processes for haploid exchangeable population models
• Statistical properties of segregating sites
• The frequency spectrum of a mutation, and its age, in a general diffusion model
• Probability Models for DNA Sequence Evolution
• Diffusion models in population genetics
• The Distribution of Gene Frequencies Under Irreversible Mutation