Network exploration via the adaptive LASSO and SCAD penalties

DOI10.1214/08-AOAS215zbMath1166.62040arXiv0908.2053OpenAlexW3103368540WikidataQ41956523 ScholiaQ41956523MaRDI QIDQ2270657

Yang Feng, Yichao Wu, Jianqing Fan

Publication date: 29 July 2009

Published in: The Annals of Applied Statistics (Search for Journal in Brave)

Full work available at URL: https://arxiv.org/abs/0908.2053

zbMATH Keywords

precision matrixLASSOSCADadaptive LASSOgenetic networkcovariance selectionbreast cancer dataGaussian concentration graphical modeltelephone call center data

Mathematics Subject Classification ID

Estimation in multivariate analysis (62H12) Monte Carlo methods (65C05)

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Uses Software

• glasso
• MIM
• HdBCS

Cites Work

• Unnamed Item
• Unnamed Item
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• Unnamed Item
• Sparse inverse covariance estimation with the graphical lasso
• The Adaptive Lasso and Its Oracle Properties
• Rejoinder: One-step sparse estimates in nonconcave penalized likelihood models
• High-dimensional classification using features annealed independence rules
• Sparsistency and rates of convergence in large covariance matrix estimation
• Heuristics of instability and stabilization in model selection
• Sparse graphical models for exploring gene expression data
• Nonconcave penalized likelihood with a diverging number of parameters.
• Least angle regression. (With discussion)
• Sparse permutation invariant covariance estimation
• Sparse estimation of large covariance matrices via a nested Lasso penalty
• High-dimensional graphs and variable selection with the Lasso
• Variable selection using MM algorithms
• Efficient estimation of covariance selection models
• Model selection for Gaussian concentration graphs
• Gradient directed regularization for sparse Gaussian concentration graphs, with applications to inference of genetic networks
• Model selection and estimation in the Gaussian graphical model
• First-Order Methods for Sparse Covariance Selection
• Determinant Maximization with Linear Matrix Inequality Constraints
• Variable Selection via Nonconcave Penalized Likelihood and its Oracle Properties
• Introduction to Graphical Modelling
• Analysis of call centre arrival data using singular value decomposition
• Covariance matrix selection and estimation via penalised normal likelihood

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