A General Framework for Weighted Gene Co-Expression Network Analysis
From MaRDI portal
Publication:5700521
DOI10.2202/1544-6115.1128zbMath1077.92042OpenAlexW2060705109WikidataQ29617580 ScholiaQ29617580MaRDI QIDQ5700521
Publication date: 28 October 2005
Published in: Statistical Applications in Genetics and Molecular Biology (Search for Journal in Brave)
Full work available at URL: http://www.bepress.com/sagmb/vol4/iss1/art17
Medical applications (general) (92C50) Biochemistry, molecular biology (92C40) Genetics and epigenetics (92D10)
Related Items (47)
On dynamic network security: a random decentering algorithm on graphs ⋮ TGCnA: temporal gene coexpression network analysis using a low-rank plus sparse framework ⋮ Investigating the relationship between \(k\)-core and \(s\)-core network decompositions ⋮ Sparse Laplacian shrinkage with the graphical Lasso estimator for regression problems ⋮ Sequential double cross-validation for assessment of added predictive ability in high-dimensional omic applications ⋮ Nonparametric Bayesian learning of heterogeneous dynamic transcription factor networks ⋮ Matrix positivity preservers in fixed dimension. I ⋮ Sparse factor model for co-expression networks with an application using prior biological knowledge ⋮ Identification of consistent functional genetic modules ⋮ Asymptotic inference for high-dimensional data ⋮ Clustering of high throughput gene expression data ⋮ Partial correlation matrix estimation using ridge penalty followed by thresholding and re-estimation ⋮ Inference of genetic regulatory networks with regulatory hubs using vector autoregressions and automatic relevance determination with model selections ⋮ Optimal rates for community estimation in the weighted stochastic block model ⋮ A method for generating realistic correlation matrices ⋮ Efficient Computation of the Weighted Clustering Coefficient ⋮ A Compound Decision Approach to Covariance Matrix Estimation ⋮ On Joint Estimation of Gaussian Graphical Models for Spatial and Temporal Data ⋮ The cluster correlation-network support vector machine for high-dimensional binary classification ⋮ Retaining positive definiteness in thresholded matrices ⋮ Critical exponents of graphs ⋮ Network assisted analysis to reveal the genetic basis of autism ⋮ Two-stage feature selection for classification of gene expression data based on an improved salp swarm algorithm ⋮ Social cohesion, structural holes, and a tale of two measures ⋮ A network approach to quantifying radiotherapy effect on cancer: radiosensitive gene group centrality ⋮ Comparison of Different Generalizations of Clustering Coefficient and Local Efficiency for Weighted Undirected Graphs ⋮ The sparse Laplacian shrinkage estimator for high-dimensional regression ⋮ A panorama of positivity. II: Fixed dimension ⋮ Structure of triadic relations in multiplex networks ⋮ Complete characterization of Hadamard powers preserving Loewner positivity, monotonicity, and convexity ⋮ Statistical analysis of weighted networks ⋮ Topology dependent epidemic spreading velocity in weighted networks ⋮ Unnamed Item ⋮ Review on statistical methods for gene network reconstruction using expression data ⋮ A co-expression modules based gene selection for cancer recognition ⋮ Simulating weighted, directed small-world networks ⋮ Tree-guided group lasso for multi-response regression with structured sparsity, with an application to eQTL mapping ⋮ Topology of whole-brain functional MRI networks: improving the truncated scale-free model ⋮ Robust network-based analysis of the associations between (epi)genetic measurements ⋮ Clustering coefficients of large networks ⋮ Local dependency in networks ⋮ Multiple Response Regression for Gaussian Mixture Models with Known Labels ⋮ In defense of the indefensible: a very naïve approach to high-dimensional inference ⋮ Functions preserving positive definiteness for sparse matrices ⋮ Efficient computation of the Weighted Clustering Coefficient ⋮ Network-based survival analysis to discover target genes for developing cancer immunotherapies and predicting patient survival ⋮ Preserving positivity for rank-constrained matrices
This page was built for publication: A General Framework for Weighted Gene Co-Expression Network Analysis
