A decomposition-based approach for deriving positive steady states of a class of chemical reaction networks with non-mass-action kinetics

DOI10.46793/MATCH.92-2.483HzbMATH Open1544.92055MaRDI QIDQ6562224FDOQ6562224

Patrick Vincent N. Lubenia, Bryan S. Hernandez

Publication date: 26 June 2024

Published in: MATCH - Communications in Mathematical and in Computer Chemistry (Search for Journal in Brave)

Mathematics Subject Classification ID

Biochemistry, molecular biology (92C40) Systems biology, networks (92C42) Kinetics in biochemical problems (pharmacokinetics, enzyme kinetics, etc.) (92C45) Classical flows, reactions, etc. in chemistry (92E20)

Cites Work

• Multiple Equilibria in Complex Chemical Reaction Networks: II. The Species-Reaction Graph
• Generalized Mass Action Systems: Complex Balancing Equilibria and Sign Vectors of the Stoichiometric and Kinetic-Order Subspaces
• Multistationarity in structured reaction networks
• Translated chemical reaction networks
• Design principles for robust biochemical reaction networks: what works, what cannot work, and what might almost work
• Foundations of chemical reaction network theory
• Generalized Mass-Action Systems and Positive Solutions of Polynomial Equations with Real and Symbolic Exponents (Invited Talk)
• A network-based parametrization of positive steady states of power-law kinetic systems
• Independent decompositions of chemical reaction networks
• Independent, Incidence Independent and Weakly Reversible Decompositions of Chemical Reaction Networks
• A deficiency-based approach to parametrizing positive equilibria of biochemical reaction systems
• Existence of Positive Steady States for Weakly Reversible Mass-Action Systems
• Computing weakly reversible deficiency zero network translations using elementary flux modes
• Computational Translation Framework Identifies Biochemical Reaction Networks with Special Topologies and Their Long-Term Dynamics
• Derivation of Steady State Parametrizations of Chemical Reaction Networks with n Independent and Identical Subnetworks
• Comparative analysis of kinetic realizations of insulin signaling

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