A discrete Fourier analysis for evolutionary trees.

DOI10.1073/PNAS.91.8.3339MaRDI QIDQ4292177zbMATH OpenOpenAlexWikidataFDO

Authors David Penny, M. D. Hendy, Mike Steel

Publication date 11 July 1994

Published in Proceedings of the National Academy of Sciences (Search for Journal in Brave)

Full work available at URL https://doi.org/10.1073/pnas.91.8.3339

zbMATH Keywords

Cavender/Farris modelclosest tree algorithmcompatibility analysisdiscrete Fourier transformationsevolutionary treeexpected frequenciesHadamard conjugationshigher-order interactionsinvertible relationshipsKimura's 3ST modelleast-squares selection proceduremultiple substitutionsnucleotide patternsparsimonyphylogenetic treeprimate hemoglobin sequencesspectral analysisunique best-fit phylogenetic tree

Mathematics Subject Classification ID

Fourier and Fourier-Stieltjes transforms and other transforms of Fourier type (42A38) Harmonic analysis in one variable (42A99) Problems related to evolution (92D15)

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Cited in

(27)

• Spectral analysis and a closest tree method for genetic sequences
• Fourier calculus on evolutionary trees
• Reconstructing phylogenies from nucleotide pattern probabilities: A survey and some new results
• Equivalence of two Fourier methods for biological sequences
• Towards optimal distance functions for stochastic substitution models
• Preface. Algebraic methods in phylogenetics
• Dimensions of group-based phylogenetic mixtures
• Lie-Markov models derived from finite semigroups
• Spectral analysis of phylogenetic data
• Dimensional reduction for the general Markov model on phylogenetic trees
• Phylogenetic analysis of DNA sequences based on fractional Fourier transform
• Analytic solutions of maximum likelihood on forks of four taxa
• Cases in which ancestral maximum likelihood will be confusingly misleading
• Do tree split probabilities determine the branch lengths?
• Evaluation of the relative performance of the subflattenings method for phylogenetic inference
• Matrix group structure and Markov invariants in the strand symmetric phylogenetic substitution model
• MULTIPLE COMPARISONS OF LOG-LIKELIHOODS AND COMBINING NONNESTED MODELS WITH APPLICATIONS TO PHYLOGENETIC TREE SELECTION
• scientific article; zbMATH DE number 6277703 (Why is no real title available?)
• Hadamard conjugation: an analytic tool for phylogenetics
• Systematics and symmetry in molecular phylogenetic modelling: perspectives from physics
• Bootstrapping phylogenetic trees: theory and methods
• Adaptation of the closest tree method for a two state quartet to Jukes-Cantor tripod trees
• Maximum likelihood estimation for unrooted 3-leaf trees: an analytic solution for the CFN model
• A novel algebraic approach to time-reversible evolutionary models
• Statistics for phylogenetic trees
• Analytic solutions for three taxon ML trees with variable rates across sites
• Some uses of the Farris transform in mathematics and phylogenetics -- A review

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