Basecalling using hidden Markov models

DOI10.1016/J.JFRANKLIN.2003.12.008MaRDI QIDQ2492529zbMATH OpenOpenAlexFDO

Authors Dan Ehrlich, Petros T. Boufounos, Sameh El Difrawy

Publication date 14 June 2006

Published in Journal of the Franklin Institute (Search for Journal in Brave)

Full work available at URL https://doi.org/10.1016/j.jfranklin.2003.12.008

zbMATH Keywords

BasecallingDNA sequencingHidden Markov modelsPHRED

Mathematics Subject Classification ID

Applications of Markov chains and discrete-time Markov processes on general state spaces (social mobility, learning theory, industrial processes, etc.) (60J20) Biochemistry, molecular biology (92C40)

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Cites work

• scientific article; zbMATH DE number 956613 (Why is no real title available?)
• Statistical learning formulation of the DNA base-calling problem and its solution in a Bayesian EM framework

Cited in

(7)

• Statistical learning formulation of the DNA base-calling problem and its solution in a Bayesian EM framework
• Consensus decoding of recurrent neural network basecallers
• Optimisation of HMM topologies enhances DNA and protein sequence modelling
• Spectral and graph-theoretic bounds on steady-state-probability estimation performance for an ergodic Markov chain
• scientific article; zbMATH DE number 1945223 (Why is no real title available?)
• A confidence interval test for the detection of structural breaks
• Regime switching volatility calibration by the Baum-Welch method

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Uses Software

• Phrap

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