Bayesian inference for contact networks given epidemic data
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\texttt{R package epinet}\texttt{R package ergm}Erdős-Rényiexponential random graph model (ERGM)MCMCmeaslesstochastic SEIR epidemic
Random graphs (graph-theoretic aspects) (05C80) Small world graphs, complex networks (graph-theoretic aspects) (05C82) Applications of graph theory (05C90) Software, source code, etc. for problems pertaining to statistics (62-04) Bayesian inference (62F15) Applications of statistics to biology and medical sciences; meta analysis (62P10) Numerical analysis or methods applied to Markov chains (65C40) Epidemiology (92D30)
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Cites work
- A SIMPLE STOCHASTIC EPIDEMIC
- Bayesian Inference for Stochastic Epidemics in Populations with Random Social Structure
- Directly transmitted infectious diseases: control by vaccination
- Goodness of Fit of Social Network Models
- scientific article; zbMATH DE number 3989161 (Why is no real title available?)
- Inference for epidemics with three levels of mixing: methodology and application to a measles outbreak
- Modeling infectious diseases in humans and animals
- SIR dynamics in random networks with heterogeneous connectivity
- Statistical inference and model selection for the 1861 Hagelloch measles epidemic
- The estimation of latent and infectious periods
Cited in
(31)- RLadyBug -- an R package for stochastic epidemic models
- The stochastic SEIR model before extinction: computational approaches
- A network epidemic model for online community commissioning data
- A dynamic individual-based model for high-resolution ant interactions
- Modifying the network-based stochastic SEIR model to account for quarantine: an application to COVID-19
- Bayesian dynamic network actor models with application to South Korean COVID-19 patient movement data
- Probabilistic predictions of SIS epidemics on networks based on population-level observations
- Epidemiologic network inference
- Model-based clustering of large networks
- Inference for epidemics with three levels of mixing: methodology and application to a measles outbreak
- Contact intervals, survival analysis of epidemic data, and estimation of \(R_{0}\)
- The patient-zero problem with noisy observations
- The transmission process: a combinatorial stochastic process for the evolution of transmission trees over networks
- Network-based analysis of a small Ebola outbreak
- epinet
- Bayesian Inference for Stochastic Epidemics in Populations with Random Social Structure
- Bayesian inference of spreading processes on networks
- A Network‐based Analysis of the 1861 Hagelloch Measles Data
- Introduction to the special issue on data science for COVID-19
- A semiparametric Bayesian approach to epidemics, with application to the spread of the coronavirus MERS in South Korea in 2015
- Fast inference for network models of infectious disease spread
- Likelihood-Based Inference for Partially Observed Epidemics on Dynamic Networks
- Unifying incidence and prevalence under a time-varying general branching process
- Modeling and pricing cyber insurance. Idiosyncratic, systematic, and systemic risks
- Estimating within-household contact networks from egocentric data
- Estimating contact network properties by integrating multiple data sources associated with infectious diseases
- Incorporating contact network uncertainty in individual level models of infectious disease using approximate Bayesian computation
- Inferring contact network characteristics from epidemic data via compact mean-field models
- A spatial epidemic model for disease spread over a heterogeneous spatial support
- Effects of contact network structure on epidemic transmission trees: implications for data required to estimate network structure
- Surrogate models for diffusion on graphs via sparse polynomials
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