DNA microarray experiments: biological and technological aspects

DOI10.1111/J.0006-341X.2002.00701.XMaRDI QIDQ3079014zbMATH OpenOpenAlexWikidataFDO

Authors Danh V. Nguyen, A. Bulak Arpat, Naisyin Wang, Raymond J. Carroll

Publication date 1 March 2011

Published in Biometrics (Search for Journal in Brave)

Full work available at URL https://doi.org/10.1111/j.0006-341x.2002.00701.x

zbMATH Keywords

affymetrixcDNAdesign of experimentsgene expressionimage processingmicroarraymolecular biologynormalizationnucleotide labelingoligonucleotidereverse transcriptiontranscriptionvariability

Mathematics Subject Classification ID

Applications of statistics to biology and medical sciences; meta analysis (62P10) Biochemistry, molecular biology (92C40)

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Cites work

• Empirical Bayes Analysis of a Microarray Experiment
• Experimental design for gene expression microarrays
• Importance of replication in microarray gene expression studies: Statistical methods and evidence from repetitive cDNA hybridizations
• Model-based analysis of oligonucleotide arrays: Expression index computation and outlier detection
• Significance analysis of microarrays applied to the ionizing radiation response

Cited in

(25)

• Partial least squares dimension reduction for microarray gene expression data with a censored response
• Designs with blocks of size two and applications to microarray experiments
• Dimension reduction of gene expression data
• A method of microarray data storage using array data type
• Statistical methods for the analysis of high-throughput data based on functional profiles derived from the Gene Ontology
• Optimal factorial designs for CDNA microarray experiments
• MDSM: microarray database schema matching using the Hungarian method
• Variance estimation in the analysis of microarray data
• Pareto simulated annealing for the design of experiments: illustrated by a gene expression study
• Variances are not always nuisance parameters
• Gene profiling for determining pluripotent genes in a time course microarray experiment
• Design Considerations for Efficient and Effective Microarray Studies
• Multiple-Testing Strategy for Analyzing cDNA Array Data on Gene Expression
• Nonparametric Testing for DNA Copy Number Induced Differential mRNA Gene Expression
• Time-course data prediction for repeatedly measured gene expression
• Exploiting blank spots for model-based background correction in discovering genes with DNA array data
• Liquid chromatography mass spectrometry-based proteomics: biological and technological as\-pects
• Bayesian Modeling of Differential Gene Expression
• The Clustering of Regression Models Method with Applications in Gene Expression Data
• Best subset selection, persistence in high-dimensional statistical learning and optimization under l₁ constraint
• Using GWAS data to identify copy number variants contributing to common complex diseases
• On partial least squares dimension reduction for microarray-based classification: a simulation study
• On estimating the proportion of true null hypotheses for false discovery rate controlling procedures in exploratory DNA microarray studies
• Survival prediction using gene expression data: a review and comparison
• Distribution modeling and simulation of gene expression data

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